Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 9.6e-248 859.8 448 100.0
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 3.2e-235 818.1 444 95.3
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 2.6e-168 595.9 444 70.5
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 8.3e-167 590.9 437 70.5
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 2.4e-166 589.3 437 70.9
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 2.4e-166 589.3 435 72.2
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 2.0e-165 586.3 435 71.7
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 1.9e-163 579.7 434 70.5
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 5.6e-163 578.2 437 69.6
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.4e-161 573.5 435 69.4
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.8e-161 573.2 435 70.3
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 2.3e-161 572.8 430 70.7
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 5.2e-161 571.6 431 69.4
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 6.8e-161 571.2 449 68.2
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 1.2e-160 570.5 431 69.4
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 2.0e-160 569.7 440 69.3
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.4e-160 568.9 435 69.4
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 5.8e-160 568.2 435 69.4
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.3e-159 567.0 431 70.1
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 4.9e-159 565.1 428 70.1
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 8.3e-159 564.3 438 67.6
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.4e-158 561.6 432 69.7
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 1.6e-157 560.1 439 67.9
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 6.0e-157 558.1 433 67.9
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 7.8e-157 557.8 438 68.3
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.0e-156 557.4 444 66.9
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 3.0e-156 555.8 438 66.0
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 1.5e-155 553.5 435 67.1
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 1.9e-155 553.1 437 67.7
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 2.5e-155 552.7 434 68.4
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 5.6e-155 551.6 441 67.1
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 2.1e-154 549.7 414 69.8
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.0e-152 543.1 432 68.8
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 2.0e-152 543.1 430 67.4
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.6e-152 542.7 432 67.6
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 2.2e-151 539.7 430 66.5
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.2e-151 539.7 436 65.6
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 2.9e-151 539.3 430 67.4
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 7.1e-150 534.6 444 66.7
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 9.2e-150 534.3 440 65.2
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 2.7e-149 532.7 432 66.0
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 7.8e-149 531.2 430 65.3
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 2.3e-148 529.6 439 64.2
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 3.0e-148 529.3 429 65.5
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 3.9e-148 528.9 428 66.4
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 3.9e-148 528.9 429 66.9
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 8.6e-148 527.7 438 65.3
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 1.5e-147 526.9 432 65.3
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.9e-147 526.6 435 66.0
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 2.5e-147 526.2 439 66.1
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 7.3e-147 524.6 439 65.8
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 2.8e-146 522.7 434 64.1
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 4.7e-146 521.9 435 63.9
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 6.2e-146 521.5 436 64.2
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 6.2e-146 521.5 429 63.2
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.4e-145 519.6 433 64.7
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.4e-145 519.6 433 64.7
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 2.4e-145 519.6 431 65.4
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 4.0e-145 518.8 417 66.7
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 5.2e-145 518.5 433 63.5
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 6.8e-145 518.1 439 64.2
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.5e-144 516.9 439 64.2
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.5e-144 516.9 430 63.7
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 2.0e-144 516.5 431 61.5
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 2.6e-144 516.2 439 64.2
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 3.4e-144 515.8 438 64.2
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 4.4e-144 515.4 439 64.0
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 4.4e-144 515.4 438 64.8
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 7.6e-144 514.6 517 56.9
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.7e-143 513.5 462 62.8
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.9e-143 512.7 434 65.9
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 6.4e-143 511.5 435 61.4
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.9e-142 510.0 447 62.0
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 1.9e-142 510.0 440 63.9
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 7.1e-142 508.1 434 64.1
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 2.7e-141 506.1 371 70.6
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 6.0e-141 505.0 439 62.2
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 6.0e-141 505.0 432 65.3
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 3.0e-140 502.7 436 63.1
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.9e-140 502.3 435 62.8
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.9e-139 500.0 443 62.3
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.9e-139 500.0 446 62.3
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 5.6e-139 498.4 428 64.3
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.1e-138 496.5 414 62.8
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 2.8e-138 496.1 429 63.6
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 3.6e-138 495.7 438 62.1
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 2.0e-136 490.0 441 61.2
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 9.9e-136 487.6 430 59.1
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.3e-135 487.3 436 61.0
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 1.3e-135 487.3 414 63.8
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.7e-135 486.9 436 61.7
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 6.4e-135 485.0 431 59.2
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 6.4e-135 485.0 445 61.1
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 4.2e-134 482.3 429 60.8
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 4.2e-134 482.3 479 58.7
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 1.6e-133 480.3 446 58.5
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 2.7e-133 479.6 435 61.1
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 6.0e-133 478.4 442 61.8
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 6.6e-132 474.9 391 64.2
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.1e-131 474.2 436 59.2
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.5e-131 473.0 426 60.3
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 2.5e-131 473.0 431 59.9
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 2.5e-131 473.0 442 60.0
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 2.1e-130 469.9 444 59.5
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 1.1e-129 467.6 446 59.9
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.4e-129 466.5 429 61.5
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 9.0e-129 464.5 451 58.5
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 2.6e-128 463.0 413 61.0
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 9.9e-128 461.1 413 61.5
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 3.8e-127 459.1 421 62.5
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.5e-123 447.2 429 58.7
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 2.5e-123 446.4 437 57.0
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 4.8e-122 442.2 437 56.8
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 1.1e-121 441.0 438 54.6
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 6.4e-119 431.8 371 62.8
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.5e-118 429.9 432 57.6
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 3.5e-117 426.0 434 54.4
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.5e-115 420.6 432 58.3
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.6e-114 417.2 443 56.4
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 7.6e-112 408.3 523 49.3
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 6.7e-108 395.2 313 67.7
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 8.7e-108 394.8 304 65.5
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.4e-102 377.5 378 59.0
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 9.7e-99 364.8 435 50.3
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 2.4e-97 360.1 302 63.6
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.3e-95 354.4 344 56.1
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 6.5e-95 352.1 449 49.0
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 3.2e-94 349.7 434 47.2
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 2.2e-90 337.0 303 60.7
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 3.1e-89 333.2 406 47.5
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 3.2e-78 296.6 250 64.0
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.8e-76 290.8 412 46.6
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.6e-72 277.7 325 50.8
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.7e-71 274.2 177 76.8
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.5e-62 244.6 184 69.6
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 5.5e-62 242.7 197 70.1
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.8e-56 222.2 177 62.7
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 9.5e-54 215.3 187 63.1
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 2.0e-51 207.6 196 60.7
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.4e-41 174.9 139 62.6
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.4e-41 174.9 160 63.1
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 2.5e-38 164.1 242 45.0
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.7e-34 151.4 147 62.6
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 2.4e-33 147.5 120 71.7
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 2.5e-30 137.5 119 64.7
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 2.0e-27 127.9 86 70.9
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.3e-23 115.2 88 64.8
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 8.1e-21 105.9 168 41.1
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.9e-18 97.4 113 50.4
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.4e-17 95.1 106 51.9
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.5e-14 84.3 415 24.3
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 4.3e-14 83.6 118 48.3
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 2.4e-12 77.8 403 26.6
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 7.9e-08 62.8 51 56.9


User provided reference genes

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