Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 1.4e-64 249.6 142 100.0
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 3.2e-56 221.9 142 85.2
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 9.3e-56 220.3 142 83.8
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.6e-55 219.5 142 83.1
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 3.6e-55 218.4 142 83.1
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 4.6e-55 218.0 142 83.1
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.6e-55 218.0 142 83.1
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.6e-55 218.0 142 83.1
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 4.6e-55 218.0 142 83.8
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 7.9e-55 217.2 142 83.1
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 7.9e-55 217.2 142 83.1
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.0e-54 216.9 142 82.4
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.3e-54 216.5 142 83.1
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.8e-54 216.1 142 82.4
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.8e-54 216.1 142 82.4
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.8e-54 216.1 142 82.4
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.8e-54 216.1 142 83.1
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.9e-54 214.9 142 83.1
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 5.1e-54 214.5 142 81.7
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 6.7e-54 214.2 142 83.8
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 6.7e-54 214.2 142 83.1
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 1.1e-53 213.4 142 81.0
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.1e-53 213.4 142 82.4
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.1e-53 213.4 142 81.0
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.5e-53 213.0 142 80.3
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.9e-53 212.6 142 81.7
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.5e-53 212.2 142 81.0
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.5e-53 212.2 142 81.0
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 2.5e-53 212.2 146 80.8
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 2.5e-53 212.2 142 81.0
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 3.3e-53 211.8 146 80.8
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 4.3e-53 211.5 142 79.6
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 5.7e-53 211.1 142 78.9
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 7.4e-53 210.7 141 80.9
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 7.4e-53 210.7 141 80.9
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 7.4e-53 210.7 142 80.3
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 9.7e-53 210.3 142 81.7
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 1.3e-52 209.9 145 81.4
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.6e-52 209.5 142 80.3
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.6e-52 209.5 142 80.3
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.6e-52 209.5 142 79.6
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.6e-52 209.5 142 79.6
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 2.2e-52 209.1 142 81.0
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 2.2e-52 209.1 142 78.9
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.2e-52 209.1 142 80.3
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 2.8e-52 208.8 141 79.4
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 2.8e-52 208.8 145 80.7
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 3.7e-52 208.4 142 79.6
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 4.8e-52 208.0 142 80.3
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 6.3e-52 207.6 142 80.3
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 8.2e-52 207.2 142 78.9
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.2e-52 207.2 142 78.2
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.1e-51 206.8 141 79.4
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.4e-51 206.5 143 76.9
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.4e-51 206.5 142 79.6
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.8e-51 206.1 142 78.2
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 2.4e-51 205.7 142 78.2
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 2.4e-51 205.7 142 78.2
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 3.1e-51 205.3 142 78.9
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 4.1e-51 204.9 142 78.2
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 5.3e-51 204.5 142 77.5
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 5.3e-51 204.5 142 78.2
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.5e-50 203.0 141 78.0
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 1.5e-50 203.0 141 78.0
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 2.6e-50 202.2 141 78.0
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 3.4e-50 201.8 141 78.7
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.4e-50 201.8 142 77.5
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 7.7e-50 200.7 142 76.8
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.7e-50 200.7 142 76.1
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.3e-49 199.9 142 76.1
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.3e-49 199.9 147 74.8
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.3e-49 199.9 142 78.9
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 2.9e-49 198.7 142 75.4
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 5.0e-49 198.0 148 79.7
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 5.0e-49 198.0 142 75.4
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 5.0e-49 198.0 142 76.1
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 8.5e-49 197.2 142 76.1
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 8.5e-49 197.2 142 76.1
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.4e-48 196.4 142 74.6
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 4.2e-48 194.9 164 72.0
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 7.2e-48 194.1 156 71.2
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.2e-47 193.4 142 76.1
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.6e-47 193.0 142 75.4
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 2.1e-47 192.6 160 71.9
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 4.6e-47 191.4 143 72.7
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 7.9e-47 190.7 149 70.5
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 7.9e-47 190.7 142 73.2
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.8e-46 189.5 151 72.8
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.8e-46 189.5 151 72.8
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.0e-46 188.7 142 73.9
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 3.9e-46 188.3 142 75.4
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 3.9e-46 188.3 146 70.5
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 5.1e-46 188.0 152 73.7
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 6.7e-46 187.6 176 63.6
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.1e-45 186.8 155 72.3
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-45 186.8 155 72.3
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.1e-45 186.8 176 62.5
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.5e-45 186.4 168 66.1
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 2.6e-45 185.7 142 73.9
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.7e-45 184.5 144 69.4
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 1.3e-44 183.3 146 71.2
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.8e-44 182.2 140 72.1
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.8e-44 182.2 144 68.1
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 6.3e-44 181.0 152 66.4
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.8e-43 179.5 142 69.7
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 2.4e-43 179.1 138 71.7
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 6.9e-43 177.6 142 69.0
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 2.9e-41 172.2 116 81.9
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.4e-40 169.9 138 68.8
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 3.2e-40 168.7 116 78.4
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.2e-39 166.8 118 77.1
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.0e-38 163.7 140 63.6
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.5e-37 159.8 142 60.6
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 4.4e-37 158.3 142 62.0
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.7e-37 157.1 119 72.3
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 3.1e-35 152.1 116 72.4
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 9.1e-35 150.6 170 51.8
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.2e-34 150.2 125 68.0
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 2.6e-34 149.1 131 67.9
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 4.5e-34 148.3 169 59.2
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 7.7e-34 147.5 140 58.6
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.0e-33 147.1 138 63.8
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 2.2e-33 146.0 155 57.4
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 1.1e-32 143.7 116 69.0
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.5e-32 143.3 138 61.6
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.2e-31 140.2 131 66.4
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 1.4e-30 136.7 112 67.9
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 2.6e-29 132.5 99 71.7
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 4.4e-29 131.7 133 61.7
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.4e-29 131.7 81 88.9
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.8e-28 129.0 80 87.5
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.2e-28 127.5 80 87.5
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.8e-27 126.3 80 86.2
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 2.4e-27 125.9 139 56.8
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.0e-27 124.4 122 59.0
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.2e-26 123.6 77 88.3
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.0e-26 122.9 118 61.9
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.7e-26 122.5 76 89.5
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 4.2e-24 115.2 69 85.5
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 5.5e-24 114.8 69 88.4
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 7.2e-24 114.4 88 70.5
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 1.6e-23 113.2 138 50.7
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 3.6e-23 112.1 88 69.3
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 5.7e-21 104.8 135 48.9
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 4.5e-18 95.1 94 60.6
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.5e-16 90.1 73 64.4
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 3.3e-16 89.0 69 71.0
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.6e-15 86.7 57 82.5
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.6e-15 85.5 61 72.1
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 2.3e-14 82.8 135 42.2
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 3.0e-14 82.4 73 60.3
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 4.0e-14 82.0 77 58.4
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 2.7e-10 69.3 72 55.6
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 2.7e-10 69.3 72 55.6
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 9.5e-08 60.8 41 68.3
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 1.2e-07 60.5 49 61.2
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 1.6e-07 60.1 51 58.8
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 2.8e-07 59.3 51 58.8


User provided reference genes

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