Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 2342.0 1207 100.0
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1810.8 1210 76.8
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1808.1 1208 76.1
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1799.3 1204 75.8
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1796.6 1210 75.4
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1789.2 1211 74.6
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1776.1 1216 74.2
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1773.4 1208 75.7
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1772.3 1211 74.8
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1759.6 1207 74.6
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1759.2 1208 73.8
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1759.2 1211 74.7
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1757.3 1206 73.9
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1752.6 1204 73.7
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1749.2 1210 74.7
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1745.7 1209 73.7
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1741.5 1206 73.7
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1737.6 1211 73.7
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1728.4 1207 72.9
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1726.5 1210 72.9
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1717.6 1210 72.6
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1715.3 1204 73.1
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1712.2 1209 71.5
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1711.8 1207 72.2
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1706.4 1206 71.7
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1695.6 1178 73.0
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1687.5 1208 71.9
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1684.1 1204 71.0
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1682.5 1204 71.0
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1681.0 1204 70.8
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1679.5 1204 70.8
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1677.9 1204 70.8
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1672.9 1203 70.8
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1668.7 1181 72.7
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1667.9 1211 70.6
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1665.6 1204 71.6
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1664.8 1214 69.9
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1664.8 1206 70.9
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1664.8 1206 70.6
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1663.7 1204 70.6
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1662.5 1209 69.1
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1662.1 1221 70.5
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1659.0 1204 70.3
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1659.0 1171 72.6
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1651.7 1206 70.2
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1647.9 1161 71.2
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1645.6 1206 69.4
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1643.6 1202 69.6
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1641.7 1208 69.0
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1640.6 1211 69.7
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1633.6 1210 69.4
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1631.7 1209 70.0
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1629.4 1208 68.6
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1626.7 1210 68.2
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1623.6 1210 67.4
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1622.4 1211 68.9
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1614.4 1204 68.0
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1613.2 1205 68.2
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1612.0 1204 68.2
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1610.9 1205 68.2
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1610.9 1204 67.9
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1598.9 1203 69.0
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1594.7 1202 67.9
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1594.7 1202 68.6
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1588.9 1208 67.3
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1582.4 1209 66.3
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1580.1 1204 67.4
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1578.9 1208 67.1
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1575.5 1170 69.1
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1571.6 1209 66.3
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1569.3 1192 67.4
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1569.3 1212 67.1
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1568.9 1202 67.2
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1566.2 1184 67.9
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1557.3 1205 66.1
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1549.3 1183 67.5
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1548.1 1206 67.7
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1541.9 1192 66.4
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1540.0 1209 65.8
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1536.5 1192 66.3
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1533.9 1204 66.5
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1531.2 1123 69.8
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1530.0 1221 64.9
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1522.7 1207 64.3
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1515.7 1206 64.3
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1512.7 1200 64.5
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1505.7 1263 63.3
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1495.7 1210 64.7
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1484.9 1203 63.6
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1458.7 1140 65.2
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1441.0 1215 62.6
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1425.2 1140 64.5
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1414.1 992 73.7
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1402.5 1293 59.3
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1385.2 1211 61.4
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1379.0 1016 68.6
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1368.6 1207 58.7
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1342.4 1187 59.3
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1329.3 1209 56.5
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1322.4 1221 56.9
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1221.1 1054 61.3
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1169.1 891 67.2
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1149.8 807 72.5
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1137.9 964 63.4
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1127.9 836 70.9
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 2.5e-306 1055.8 1148 53.3
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.2e-268 930.6 1235 42.8
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 7.7e-268 927.9 1234 42.5
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 2.1e-265 919.8 1239 43.9
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 3.0e-256 889.4 635 71.7
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 2.2e-254 883.2 1187 45.2
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 2.6e-247 859.8 1156 45.1
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 3.5e-244 849.4 1156 44.6
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 3.4e-239 832.8 1173 43.8
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 8.3e-238 828.2 1225 40.5
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 2.8e-233 813.1 1064 47.4
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 3.5e-212 743.0 602 65.3
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.5e-210 737.6 793 51.3
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 6.9e-208 728.8 1220 37.7
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.7e-194 682.6 570 61.2
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.2e-189 666.8 638 54.2
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.1e-179 632.9 539 60.1
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 1.2e-167 595.1 472 67.6
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 4.2e-165 586.6 416 70.7
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.8e-147 528.1 489 56.2
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 1.6e-119 435.3 321 69.5
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.4e-107 395.6 297 69.4
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.5e-85 322.4 1382 24.2
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 2.2e-73 282.0 210 69.0
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.1e-72 279.6 210 65.2
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 9.3e-72 276.6 267 53.2
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 6.7e-70 270.4 187 73.8
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 6.1e-55 220.7 219 58.4
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 3.2e-48 198.4 479 31.7
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.6e-47 196.1 477 30.8
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 9.4e-40 170.2 109 78.9
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 7.5e-37 160.6 1175 20.8
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 5.4e-27 127.9 96 69.8
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 9.5e-16 90.5 90 52.2
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 1.2e-15 90.1 86 55.8
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.6e-15 89.7 351 26.2
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 6.8e-14 84.3 71 53.5
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 9.8e-13 80.5 63 65.1
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 1.3e-12 80.1 79 54.4
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 1.9e-11 76.3 79 53.2
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.9e-11 76.3 172 36.0
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 5.4e-11 74.7 50 76.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 5.4e-11 74.7 50 76.0
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 7.0e-11 74.3 69 56.5
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 7.0e-11 74.3 192 27.6
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.6e-10 73.2 76 50.0
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.0e-09 70.5 65 60.0
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 3.0e-09 68.9 65 58.5
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.3e-08 65.5 71 45.1
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 2.8e-07 62.4 271 24.7
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 5.2e-06 58.2 62 54.8
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 5.2e-06 58.2 90 44.4


User provided reference genes

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