Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0469 Punica granatum HOM05D007413 ORTHO05D009357 1.3e-51 206.5 129 100.0
Eucgr.I02025 Eucalyptus grandis HOM05D007413 ORTHO05D009357 2.9e-11 72.4 67 64.2
Lsat_1_v5_gn_2_87601 Lactuca sativa HOM05D007413 ORTHO05D009357 3.2e-10 68.9 69 52.2
BcaB06g27281 Brassica carinata HOM05D007413 ORTHO05D009357 4.1e-10 68.6 75 50.7
BcaC02g09685 Brassica carinata HOM05D007413 ORTHO05D009357 4.1e-10 68.6 76 48.7
C04p45600 Brassica napus HOM05D007413 ORTHO05D009357 4.1e-10 68.6 76 48.7
BolC4t26142H Brassica oleracea HOM05D007413 ORTHO05D009357 4.1e-10 68.6 76 48.7
Ciclev10013609m.g Citrus clementina HOM05D007413 ORTHO05D009357 7.0e-10 67.8 82 50.0
FvH4_6g47010 Fragaria vesca HOM05D007413 ORTHO05D009357 7.0e-10 67.8 116 43.1
FAN02G2783 Fragaria x ananassa HOM05D007413 ORTHO05D009357 1.2e-09 67.0 87 44.8
CARHR263170 Cardamine hirsuta HOM05D007413 ORTHO05D009357 1.6e-09 66.6 75 48.0
FAN09G1793 Fragaria x ananassa HOM05D007413 ORTHO05D009357 2.7e-09 65.9 115 40.0
FAN05G2048 Fragaria x ananassa HOM05D007413 ORTHO05D009357 3.5e-09 65.5 77 46.8
AT5G39240 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 4.6e-09 65.1 119 38.7
MELO3C024851.2 Cucumis melo HOM05D007413 ORTHO05D009357 4.6e-09 65.1 75 54.7
FAN14G4532 Fragaria x ananassa HOM05D007413 ORTHO05D009357 6.0e-09 64.7 115 41.7
Phvul.004G035200 Phaseolus vulgaris HOM05D007413 ORTHO05D009357 6.0e-09 64.7 78 47.4
Sabra17G0082000 Salix brachista HOM05D007413 ORTHO05D009357 6.0e-09 64.7 70 51.4
Potri.017G093000 Populus trichocarpa HOM05D007413 ORTHO05D009357 7.8e-09 64.3 74 50.0
CiPaw.03G089400 Carya illinoinensis HOM05D007413 ORTHO05D009357 1.0e-08 63.9 69 50.7
Hma1.2p1_0481F.1_g162070 Hydrangea macrophylla HOM05D007413 ORTHO05D009357 1.0e-08 63.9 77 50.6
Aa31LG2G3920 Aethionema arabicum HOM05D007413 ORTHO05D009357 1.3e-08 63.5 72 44.4
A04p11950 Brassica napus HOM05D007413 ORTHO05D009357 1.3e-08 63.5 75 46.7
BraA04t16860Z Brassica rapa HOM05D007413 ORTHO05D009357 1.3e-08 63.5 75 46.7
COL.COLO4_00052 Corchorus olitorius HOM05D007413 ORTHO05D009357 1.7e-08 63.2 68 51.5
Lsat_1_v5_gn_4_171221 Lactuca sativa HOM05D007413 ORTHO05D009357 1.7e-08 63.2 74 50.0
AL5G19460 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 2.3e-08 62.8 77 45.5
Carub.0007s3668 Capsella rubella HOM05D007413 ORTHO05D009357 3.0e-08 62.4 97 43.3
Cpa.g.sc3362.1 Carica papaya HOM05D007413 ORTHO05D009357 3.0e-08 62.4 75 42.7
Oeu062157.1 Olea europaea HOM05D007413 ORTHO05D009357 3.9e-08 62.0 77 44.2
RcHm_v2.0_Chr2g0166071 Rosa chinensis HOM05D007413 ORTHO05D009357 3.9e-08 62.0 84 42.9
Potri.004G119600 Populus trichocarpa HOM05D007413 ORTHO05D009357 5.0e-08 61.6 74 51.4
Glyma.13G057000 Glycine max HOM05D007413 ORTHO05D009357 6.6e-08 61.2 81 44.4
Sabra04G0069100 Salix brachista HOM05D007413 ORTHO05D009357 6.6e-08 61.2 72 47.2
ClCG11G004700 Citrullus lanatus HOM05D007413 ORTHO05D009357 1.1e-07 60.5 75 42.7
VMungo0464G1276 Vigna mungo HOM05D007413 ORTHO05D009357 1.1e-07 60.5 108 38.0
Oeu007062.1 Olea europaea HOM05D007413 ORTHO05D009357 1.5e-07 60.1 72 47.2
THA.LOC104825781 Tarenaya hassleriana HOM05D007413 ORTHO05D009357 1.5e-07 60.1 66 47.0
AL7G51220 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 2.5e-07 59.3 77 41.6
CANSAT64G0406 Cannabis sativa HOM05D007413 ORTHO05D009357 2.5e-07 59.3 74 47.3
Thhalv10027993m.g Eutrema salsugineum HOM05D007413 ORTHO05D009357 2.5e-07 59.3 73 46.6
Nn4g23392 Nelumbo nucifera HOM05D007413 ORTHO05D009357 2.5e-07 59.3 63 52.4
Prupe.3G256400 Prunus persica HOM05D007413 ORTHO05D009357 2.5e-07 59.3 75 48.0
QL02p067998 Quercus lobata HOM05D007413 ORTHO05D009357 2.5e-07 59.3 120 40.8
Sp7g02750 Schrenkiella parvula HOM05D007413 ORTHO05D009357 2.5e-07 59.3 81 43.2
CAN.G206.219 Capsicum annuum HOM05D007413 ORTHO05D009357 3.3e-07 58.9 69 50.7
MD09G1064600 Malus domestica HOM05D007413 ORTHO05D009357 3.3e-07 58.9 80 43.8
Psat1g067640 Pisum sativum HOM05D007413 ORTHO05D009357 3.3e-07 58.9 74 41.9
TPR.G10008 Trifolium pratense HOM05D007413 ORTHO05D009357 3.3e-07 58.9 75 41.3
CSS0009905 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 4.3e-07 58.5 116 39.7
CSS0018085 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 4.3e-07 58.5 116 39.7
Sopen02g033450 Solanum pennellii HOM05D007413 ORTHO05D009357 4.3e-07 58.5 67 52.2
THA.LOC109116393 Tarenaya hassleriana HOM05D007413 ORTHO05D009357 4.3e-07 58.5 67 46.3
Gorai.012G049200 Gossypium raimondii HOM05D007413 ORTHO05D009357 5.6e-07 58.2 110 39.1
MD17G1057900 Malus domestica HOM05D007413 ORTHO05D009357 5.6e-07 58.2 75 45.3
Nn3g17420 Nelumbo nucifera HOM05D007413 ORTHO05D009357 5.6e-07 58.2 63 50.8
Migut.K01283 Erythranthe guttata HOM05D007413 ORTHO05D009357 7.3e-07 57.8 73 46.6
Lalb_Chr06g0174991 Lupinus albus HOM05D007413 ORTHO05D009357 7.3e-07 57.8 64 50.0
Manes.02G054200 Manihot esculenta HOM05D007413 ORTHO05D009357 7.3e-07 57.8 82 42.7
Nitab4.5_0000565g0230 Nicotiana tabacum HOM05D007413 ORTHO05D009357 7.3e-07 57.8 76 47.4
Nitab4.5_0010051g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 7.3e-07 57.8 124 40.3
MELO3C022028.2 Cucumis melo HOM05D007413 ORTHO05D009357 9.5e-07 57.4 75 44.0
Solyc02g088740.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 9.5e-07 57.4 67 52.2
Aa31LG9G16690 Aethionema arabicum HOM05D007413 ORTHO05D009357 1.2e-06 57.0 97 38.1
Gohir.A05G371900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 1.2e-06 57.0 110 38.2
Medtr6g015150 Medicago truncatula HOM05D007413 ORTHO05D009357 1.2e-06 57.0 67 43.3
HPP92_023631 Vanilla planifolia HOM05D007413 ORTHO05D009357 1.2e-06 57.0 103 36.9
Aqoxy3G03598 Aquilegia oxysepala HOM05D007413 ORTHO05D009357 1.6e-06 56.6 121 38.8
AT3G29370 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 2.1e-06 56.2 109 37.6
ClCG07G007410 Citrullus lanatus HOM05D007413 ORTHO05D009357 2.1e-06 56.2 127 40.2
SGA_v2.0_scaffold148G36473 Striga asiatica HOM05D007413 ORTHO05D009357 2.1e-06 56.2 72 44.4
Lj2g0007962 Lotus japonicus HOM05D007413 ORTHO05D009357 2.8e-06 55.8 75 41.3
Carub.0005s0809 Capsella rubella HOM05D007413 ORTHO05D009357 3.6e-06 55.5 72 43.1
Gohir.D04G043900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 3.6e-06 55.5 122 37.7
SalBow1G0329 Salvia bowleyana HOM05D007413 ORTHO05D009357 3.6e-06 55.5 73 45.2
TWI34G0597 Tripterygium wilfordii HOM05D007413 ORTHO05D009357 3.6e-06 55.5 109 35.8
Duzib147G0133 Durio zibethinus HOM05D007413 ORTHO05D009357 4.7e-06 55.1 103 38.8
Sc14g0006230 Simmondsia chinensis HOM05D007413 ORTHO05D009357 4.7e-06 55.1 85 49.4
unitig_62.g23378 Utricularia gibba HOM05D007413 ORTHO05D009357 4.7e-06 55.1 77 44.2
SalBow1G6503 Salvia bowleyana HOM05D007413 ORTHO05D009357 6.2e-06 54.7 78 43.6


User provided reference genes

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