Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 2.0e-139 499.2 269 100.0
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 4.6e-64 248.8 270 53.0
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 7.7e-59 231.5 242 51.7
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 1.1e-57 227.6 243 52.3
RcHm_v2.0_Chr4g0415951 Rosa chinensis HOM05D007633 ORTHO05D008817 2.7e-56 223.0 270 44.4
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 6.1e-56 221.9 268 51.9
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 1.4e-55 220.7 243 50.2
Hma1.2p1_0745F.1_g212150 Hydrangea macrophylla HOM05D007633 ORTHO05D008817 3.9e-55 219.2 242 51.2
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 5.7e-54 215.3 241 47.3
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 1.3e-53 214.2 274 51.5
FAN02G3335 Fragaria x ananassa HOM05D007633 ORTHO05D008817 2.8e-53 213.0 274 43.8
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 6.3e-53 211.8 268 51.9
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 6.3e-53 211.8 237 48.9
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 8.2e-53 211.5 242 49.6
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 5.3e-52 208.8 224 50.0
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 1.2e-51 207.6 251 45.4
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 2.0e-51 206.8 268 42.5
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 4.5e-51 205.7 268 47.0
FAN22G0362 Fragaria x ananassa HOM05D007633 ORTHO05D008817 5.9e-51 205.3 274 43.4
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 5.9e-51 205.3 242 46.7
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 5.9e-51 205.3 269 44.2
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 1.0e-50 204.5 242 48.3
FvH4_4g16290 Fragaria vesca HOM05D007633 ORTHO05D008817 1.9e-49 200.3 274 44.2
FAN12G0707 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.9e-49 200.3 274 44.2
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 4.2e-49 199.1 242 45.5
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 5.5e-49 198.7 268 44.0
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 2.1e-48 196.8 232 47.4
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 4.0e-47 192.6 242 45.0
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 5.2e-47 192.2 271 42.8
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 5.2e-47 192.2 266 41.7
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 2.6e-46 189.9 248 46.8
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 4.4e-46 189.1 242 43.4
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 7.5e-46 188.3 267 43.4
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 1.3e-45 187.6 270 44.1
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 1.3e-45 187.6 243 46.5
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 3.7e-45 186.0 249 45.4
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 7.0e-44 181.8 162 53.7
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 1.6e-43 180.6 238 46.2
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 2.7e-43 179.9 270 42.2
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 4.5e-43 179.1 236 44.5
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 2.9e-42 176.4 243 42.8
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 5.0e-42 175.6 241 42.3
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 4.2e-41 172.6 240 38.8
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 9.4e-41 171.4 246 43.9
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 1.6e-40 170.6 167 53.9
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 4.7e-40 169.1 231 45.0
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 6.8e-39 165.2 181 53.0
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 1.5e-38 164.1 194 46.9
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 3.4e-38 162.9 269 41.6
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 4.4e-38 162.5 244 40.6
FAN07G1430 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.3e-37 161.0 207 44.0
vmacro15349 Vaccinium macrocarpon HOM05D007633 ORTHO05D008817 1.7e-37 160.6 246 40.2
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 1.2e-35 154.5 231 41.1
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 2.9e-34 149.8 238 38.7
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 2.9e-34 149.8 231 40.3
Hund12119 Selenicereus undatus HOM05D007633 ORTHO05D008817 2.1e-32 143.7 243 37.4
CiPaw.01G167500 Carya illinoinensis HOM05D007633 ORTHO05D008817 2.8e-32 143.3 270 36.7
PSO761G0485 Papaver somniferum HOM05D007633 ORTHO05D008817 1.0e-31 141.4 234 36.8
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 1.4e-31 141.0 258 39.5
ClCG05G005110 Citrullus lanatus HOM05D007633 ORTHO05D008817 2.3e-31 140.2 243 40.3
PSO210G6592 Papaver somniferum HOM05D007633 ORTHO05D008817 2.3e-31 140.2 234 37.6
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 2.3e-31 140.2 238 36.1
Nitab4.5_0008118g0020 Nicotiana tabacum HOM05D007633 ORTHO05D008817 4.0e-31 139.4 239 34.3
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 6.8e-31 138.7 239 35.6
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 1.5e-30 137.5 239 36.0
Peaxi162Scf00192g01119 Petunia axillaris HOM05D007633 ORTHO05D008817 2.0e-30 137.1 162 45.7
Ah.04g154590 Amaranthus hybridus HOM05D007633 ORTHO05D008817 2.6e-30 136.7 230 37.8
PSO761G0330 Papaver somniferum HOM05D007633 ORTHO05D008817 5.7e-30 135.6 228 39.5
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 1.3e-29 134.4 242 35.1
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.3e-29 134.4 237 35.9
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 8.3e-29 131.7 157 42.0
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 5.4e-28 129.0 155 43.9
PSO210G0191 Papaver somniferum HOM05D007633 ORTHO05D008817 1.2e-27 127.9 227 37.9
CDE07G1037 Ceratophyllum demersum HOM05D007633 ORTHO05D008817 2.7e-27 126.7 151 42.4
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 1.0e-26 124.8 164 41.5
AUR62034710 Chenopodium quinoa HOM05D007633 ORTHO05D008817 3.3e-25 119.8 174 39.7
Solyc06g054140.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 4.3e-25 119.4 157 39.5
Nitab4.5_0000321g0150 Nicotiana tabacum HOM05D007633 ORTHO05D008817 9.5e-25 118.2 160 38.8
arahy.Tifrunner.gnm1.ann1.5LNY8Z Arachis hypogaea HOM05D007633 ORTHO05D008817 3.6e-24 116.3 168 42.3
Peaxi162Scf00092g00615 Petunia axillaris HOM05D007633 ORTHO05D008817 4.7e-24 115.9 233 34.3
Lsat_1_v5_gn_8_155361 Lactuca sativa HOM05D007633 ORTHO05D008817 5.2e-23 112.5 135 42.2
VMungo1215G1192 Vigna mungo HOM05D007633 ORTHO05D008817 2.6e-22 110.2 245 35.9
arahy.Tifrunner.gnm1.ann1.VQRK5I Arachis hypogaea HOM05D007633 ORTHO05D008817 7.5e-22 108.6 167 40.1
SalBow3G0862 Salvia bowleyana HOM05D007633 ORTHO05D008817 7.5e-22 108.6 229 34.5
MD13G1194600 Malus domestica HOM05D007633 ORTHO05D008817 1.3e-21 107.8 134 44.8
Nitab4.5_0001920g0040 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.6e-19 100.9 192 34.9
AUR62043551 Chenopodium quinoa HOM05D007633 ORTHO05D008817 1.5e-17 94.4 179 36.9
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 2.5e-17 93.6 251 30.3
EL10Ac3g06495 Beta vulgaris HOM05D007633 ORTHO05D008817 5.6e-17 92.4 244 29.1
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 2.8e-16 90.1 160 34.4
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 2.3e-15 87.0 248 29.8
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 4.0e-15 86.3 243 30.0
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 4.0e-15 86.3 247 29.6
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 8.9e-15 85.1 220 29.5
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 8.9e-15 85.1 220 29.5
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 8.9e-15 85.1 235 29.4
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 3.4e-14 83.2 235 29.4
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 1.7e-13 80.9 248 29.8
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 1.7e-13 80.9 247 29.6
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 2.2e-13 80.5 235 28.9
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 2.2e-13 80.5 235 28.9
PGSC0003DMG400016306 Solanum tuberosum HOM05D007633 ORTHO05D008817 2.4e-12 77.0 104 39.4
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 7.0e-12 75.5 234 26.9
TWI73G0180 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 3.5e-11 73.2 101 42.6
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 1.0e-10 71.6 138 29.7
Sp1g04300 Schrenkiella parvula HOM05D012198 ORTHO05D008817 3.9e-10 69.7 245 27.3
MD07G1251800 Malus domestica HOM05D007633 ORTHO05D008817 3.1e-07 60.1 86 40.7
DCAR_030642 Daucus carota HOM05D007633 ORTHO05D008817 8.9e-07 58.5 64 46.9
Cpa.g.sc58.92 Carica papaya HOM05D000003 ORTHO05D000004 2.0e-06 57.4 53 54.7
Cpa.g.sc58.94 Carica papaya HOM05D007633 ORTHO05D008817 7.5e-06 55.5 97 35.1


User provided reference genes

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