Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 1.3e-232 809.3 396 100.0
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 2.4e-226 788.5 396 97.5
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 1.4e-157 560.1 395 68.1
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 2.2e-155 552.7 387 66.9
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 1.2e-153 547.0 399 67.7
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 4.3e-151 538.5 398 66.8
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 9.6e-151 537.3 398 66.8
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 2.4e-149 532.7 389 66.6
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 1.5e-148 530.0 389 66.3
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 2.0e-148 529.6 388 67.0
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 3.4e-148 528.9 388 63.9
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 4.5e-148 528.5 397 63.2
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 5.8e-148 528.1 387 65.1
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 1.3e-147 526.9 388 66.2
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 1.7e-147 526.6 404 65.3
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 3.8e-147 525.4 387 63.6
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 3.8e-147 525.4 387 64.9
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 1.1e-146 523.9 398 62.8
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 1.4e-146 523.5 388 65.5
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 2.5e-146 522.7 389 65.3
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 3.2e-146 522.3 390 66.7
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 4.2e-146 521.9 398 62.3
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 2.1e-145 519.6 392 61.0
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 2.1e-145 519.6 390 62.8
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 2.1e-145 519.6 387 63.6
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 3.5e-145 518.8 397 60.5
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 7.9e-145 517.7 388 64.9
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 1.0e-144 517.3 386 62.4
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.0e-144 517.3 389 63.5
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 3.0e-144 515.8 386 62.2
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 3.0e-144 515.8 390 63.1
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 3.9e-144 515.4 389 64.3
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 5.1e-144 515.0 390 63.3
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 5.1e-144 515.0 389 63.5
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 1.5e-143 513.5 397 60.7
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 1.5e-143 513.5 387 61.8
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 1.5e-143 513.5 389 63.2
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 1.5e-143 513.5 398 64.1
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 1.9e-143 513.1 392 63.3
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.9e-143 513.1 389 63.0
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 1.9e-143 513.1 389 64.3
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 1.9e-143 513.1 390 61.5
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 1.9e-143 513.1 389 63.8
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 2.5e-143 512.7 399 64.7
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 3.3e-143 512.3 391 63.4
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 4.3e-143 511.9 399 59.6
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 7.4e-143 511.1 398 62.1
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 1.3e-142 510.4 388 60.3
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.6e-142 510.0 389 63.0
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 1.6e-142 510.0 399 64.2
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 2.2e-142 509.6 398 60.8
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 3.7e-142 508.8 396 61.6
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 8.2e-142 507.7 389 62.0
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 3.1e-141 505.8 398 61.1
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 5.3e-141 505.0 396 60.1
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 9.0e-141 504.2 374 65.0
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 9.0e-141 504.2 374 65.0
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 1.5e-140 503.4 398 60.8
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 5.9e-140 501.5 397 62.0
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 2.9e-139 499.2 396 60.4
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.9e-138 496.5 391 61.4
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 7.2e-138 494.6 391 60.9
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 4.6e-137 491.9 391 60.4
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 7.4e-135 484.6 401 59.1
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 3.1e-133 479.2 389 60.2
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 2.9e-131 472.6 388 58.8
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 1.6e-129 466.8 391 58.3
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 4.7e-129 465.3 386 57.5
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 1.0e-128 464.2 385 59.2
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 2.3e-128 463.0 389 58.6
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 3.0e-128 462.6 394 59.4
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 3.9e-128 462.2 390 57.4
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 6.7e-128 461.5 389 58.1
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 6.7e-128 461.5 394 57.9
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 3.3e-127 459.1 388 58.0
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 3.3e-127 459.1 388 58.0
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 4.4e-127 458.8 393 57.5
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 9.7e-127 457.6 387 57.6
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 9.7e-127 457.6 384 57.0
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 8.2e-126 454.5 342 62.6
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 7.7e-124 448.0 394 55.3
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 1.7e-123 446.8 393 55.7
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 1.1e-122 444.1 383 57.4
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 5.5e-122 441.8 393 58.5
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 1.8e-120 436.8 379 55.1
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 6.7e-120 434.9 389 55.8
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 4.8e-118 428.7 369 56.9
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 1.4e-117 427.2 389 53.7
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 1.6e-113 413.7 311 64.6
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 2.1e-113 413.3 395 51.6
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 7.0e-109 398.3 354 59.0
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 1.3e-107 394.0 358 54.7
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 5.5e-106 388.7 351 54.7
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.4e-104 384.0 276 64.5
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 3.8e-99 365.9 394 49.2
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 2.8e-94 349.7 389 42.9
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 1.8e-93 347.1 388 49.0
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 7.0e-93 345.1 243 66.3
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 1.2e-92 344.4 267 65.5
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 1.9e-90 337.0 261 64.4
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 9.8e-87 324.7 368 45.7
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 2.8e-81 306.6 406 40.4
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 2.9e-78 296.6 191 69.1
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 1.4e-69 267.7 192 65.6
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 6.2e-65 252.3 161 71.4
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 4.0e-64 249.6 245 50.6
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 5.6e-58 229.2 192 59.4
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 5.4e-53 212.6 232 45.3
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 9.3e-53 211.8 185 62.2
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 1.3e-51 208.0 200 53.0
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.6e-49 201.1 163 59.5
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 5.1e-43 179.5 413 29.1
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 8.7e-43 178.7 110 75.5
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.5e-42 177.9 137 56.9
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 9.6e-42 175.3 150 60.7
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 2.8e-41 173.7 239 41.8
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 1.1e-40 171.8 427 29.0
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 3.1e-40 170.2 145 60.0
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 1.0e-38 165.2 169 47.9
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 3.8e-38 163.3 158 55.7
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 4.6e-36 156.4 93 74.2
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 1.1e-34 151.8 142 55.6
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 1.3e-33 148.3 378 30.7
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 1.1e-29 135.2 480 26.9
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.5e-29 134.0 95 65.3
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 1.8e-27 127.9 93 67.7
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 1.5e-23 114.8 217 34.6
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 1.7e-22 111.3 84 57.1
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 1.6e-20 104.8 222 31.5
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 1.6e-12 78.2 84 46.4
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 4.4e-10 70.1 54 57.4
CAN.G195.33 Capsicum annuum HOM05D005798 ORTHO05D007269 1.1e-08 65.5 72 55.6
HanXRQChr11g0349311 Helianthus annuus HOM05D000428 ORTHO05D011602 4.5e-07 60.1 87 44.8


User provided reference genes

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