Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 1.5e-137 493.0 290 100.0
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 7.3e-39 165.2 305 45.9
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 4.1e-34 149.4 309 38.2
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 2.7e-33 146.7 266 38.3
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 1.0e-32 144.8 201 46.8
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.9e-31 140.6 250 41.2
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.9e-31 140.6 193 40.9
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 9.5e-31 138.3 257 40.1
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 1.2e-30 137.9 272 41.2
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 1.6e-30 137.5 312 40.4
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 2.1e-30 137.1 301 35.2
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 2.8e-30 136.7 194 44.3
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 2.8e-30 136.7 288 38.5
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 3.6e-30 136.3 290 38.6
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.4e-29 134.4 288 38.2
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 8.9e-29 131.7 194 42.8
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 1.2e-28 131.3 200 48.5
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 1.2e-28 131.3 272 40.4
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.2e-28 131.3 261 41.0
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 5.8e-28 129.0 282 35.8
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 9.9e-28 128.3 272 41.5
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.7e-27 127.5 276 37.3
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 3.8e-27 126.3 258 45.0
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 4.9e-27 125.9 264 36.7
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 8.4e-27 125.2 253 37.9
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 1.1e-26 124.8 287 45.3
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 1.4e-26 124.4 263 41.1
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 1.4e-26 124.4 258 43.4
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 1.9e-26 124.0 203 43.3
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.9e-26 124.0 315 34.0
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 3.2e-26 123.2 194 40.7
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 3.2e-26 123.2 205 42.4
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 4.1e-26 122.9 194 41.8
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 4.1e-26 122.9 304 38.8
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 1.2e-25 121.3 192 40.6
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 1.6e-25 120.9 250 38.4
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 1.6e-25 120.9 199 47.7
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.6e-25 120.9 304 38.5
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 2.1e-25 120.6 316 36.4
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 2.1e-25 120.6 305 33.1
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 2.7e-25 120.2 180 43.3
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.0e-24 118.2 200 40.5
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 2.3e-24 117.1 196 39.8
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 2.3e-24 117.1 263 34.2
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 6.6e-24 115.5 286 40.9
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 2.5e-23 113.6 253 37.9
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 5.6e-23 112.5 194 39.7
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 7.3e-23 112.1 295 38.0
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 2.1e-22 110.5 190 46.8
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 1.1e-21 108.2 201 38.3
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 1.8e-21 107.5 296 35.5
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 4.0e-21 106.3 256 35.2
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 4.0e-21 106.3 184 42.4
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 1.5e-20 104.4 201 34.3
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.0e-20 104.0 309 32.4
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 4.4e-20 102.8 259 32.8
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.4e-20 102.8 254 34.3
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.4e-20 102.8 254 34.3
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 9.9e-20 101.7 196 35.2
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.7e-19 100.9 267 37.1
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.7e-19 100.9 193 36.3
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.8e-19 99.8 196 32.7
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 3.8e-19 99.8 196 32.7
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 4.9e-19 99.4 280 31.8
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 1.1e-18 98.2 198 36.9
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.1e-18 98.2 191 37.7
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.9e-18 97.4 294 32.7
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 2.4e-18 97.1 189 37.0
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 4.2e-18 96.3 198 40.9
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 9.3e-18 95.1 201 41.3
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 9.3e-18 95.1 191 36.6
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 1.6e-17 94.4 182 34.6
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.1e-17 94.0 254 33.9
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 2.1e-17 94.0 252 35.7
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 2.1e-17 94.0 258 36.8
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 2.7e-17 93.6 202 37.6
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.7e-17 93.6 258 30.6
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 3.5e-17 93.2 201 33.8
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 6.0e-17 92.4 165 39.4
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 1.3e-16 91.3 263 41.8
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.7e-16 90.9 156 38.5
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 2.3e-16 90.5 198 39.4
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 3.0e-16 90.1 190 32.6
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 3.0e-16 90.1 200 46.0
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 3.9e-16 89.7 292 28.4
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 6.6e-16 89.0 179 36.3
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.7e-16 88.6 186 32.3
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 1.9e-15 87.4 195 32.8
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 4.3e-15 86.3 200 32.5
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.3e-15 86.3 200 33.0
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 9.6e-15 85.1 192 32.8
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.3e-14 84.7 301 33.6
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.6e-14 84.3 193 31.1
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 2.1e-14 84.0 197 35.0
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 2.8e-14 83.6 191 33.5
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 6.2e-14 82.4 191 32.5
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 6.2e-14 82.4 191 37.2
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 8.1e-14 82.0 197 32.5
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 1.1e-13 81.6 208 38.0
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.1e-13 81.6 216 33.8
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 1.8e-13 80.9 193 32.1
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 1.8e-13 80.9 196 34.7
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.1e-13 80.1 195 31.8
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 3.1e-13 80.1 197 35.5
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 5.3e-13 79.3 180 30.6
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 6.9e-13 79.0 179 33.5
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 6.9e-13 79.0 195 31.3
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 9.0e-13 78.6 185 30.3
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 9.0e-13 78.6 193 38.9
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 1.2e-12 78.2 187 32.1
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.5e-12 77.8 195 34.4
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 2.6e-12 77.0 182 33.0
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 2.6e-12 77.0 182 31.9
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 5.8e-12 75.9 179 33.0
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 5.8e-12 75.9 132 33.3
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 7.6e-12 75.5 164 36.6
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.3e-11 74.7 186 30.6
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 1.7e-11 74.3 198 32.3
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 8.4e-11 72.0 179 33.0
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 1.4e-10 71.2 180 32.8
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.9e-10 70.9 175 32.6
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 3.2e-10 70.1 232 30.2
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 5.4e-10 69.3 56 57.1
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 7.1e-10 68.9 175 32.6
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 6.0e-09 65.9 198 31.3
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 7.9e-09 65.5 184 32.1
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.0e-08 65.1 204 29.9
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.0e-08 65.1 279 34.1
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 1.8e-08 64.3 157 31.8
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 1.8e-08 64.3 188 30.3
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.3e-08 63.9 189 30.7
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 3.9e-08 63.2 181 29.8
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 6.7e-08 62.4 192 29.7
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 8.7e-08 62.0 157 31.8
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 8.7e-08 62.0 191 28.8
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 1.1e-07 61.6 195 29.7
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 4.3e-07 59.7 201 28.9
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 5.6e-07 59.3 190 28.9
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 5.6e-07 59.3 190 28.9
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 7.4e-07 58.9 79 46.8
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 9.6e-07 58.5 194 28.4
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 9.6e-07 58.5 188 29.8
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 9.6e-07 58.5 199 29.1
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 1.3e-06 58.2 159 32.1
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.6e-06 57.8 187 29.9
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 1.6e-06 57.8 246 26.0
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 3.7e-06 56.6 188 29.8
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 4.8e-06 56.2 170 31.2


User provided reference genes

Program Settings