Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 7.1e-93 344.0 180 100.0
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 5.7e-34 148.3 214 46.3
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 2.8e-33 146.0 224 45.5
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 2.4e-32 142.9 219 47.9
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 7.0e-32 141.4 192 52.6
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 7.0e-32 141.4 192 52.6
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 3.5e-31 139.0 193 51.3
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.0e-30 137.5 223 44.8
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 1.3e-30 137.1 218 46.3
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.8e-30 135.6 193 51.3
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 8.6e-30 134.4 225 44.0
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 8.6e-30 134.4 211 46.0
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 1.5e-29 133.7 209 44.0
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 4.2e-29 132.1 193 49.7
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 9.5e-29 131.0 224 45.1
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 2.1e-28 129.8 203 44.3
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 3.6e-28 129.0 198 47.5
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 3.6e-28 129.0 226 43.4
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 4.7e-28 128.6 190 45.8
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 1.4e-27 127.1 216 46.8
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 2.3e-27 126.3 211 42.7
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 5.2e-27 125.2 216 46.3
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 6.8e-27 124.8 218 43.6
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 8.8e-27 124.4 208 44.2
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 1.5e-26 123.6 222 41.4
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.5e-26 123.6 185 47.0
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 2.0e-26 123.2 209 46.9
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 2.0e-26 123.2 216 44.9
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 4.4e-26 122.1 211 44.5
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.4e-26 122.1 188 48.4
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 1.7e-25 120.2 204 43.1
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 2.2e-25 119.8 186 47.8
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 2.8e-25 119.4 187 44.4
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 3.7e-25 119.0 223 41.3
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 3.7e-25 119.0 218 42.7
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 4.9e-25 118.6 202 45.0
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 6.3e-25 118.2 216 44.9
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 8.3e-25 117.9 215 43.3
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.4e-24 116.3 211 41.7
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 2.4e-24 116.3 192 46.9
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 3.1e-24 115.9 211 41.7
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.1e-24 115.5 210 42.4
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.1e-24 115.5 215 40.0
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.1e-24 115.5 210 40.5
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 4.1e-24 115.5 189 43.9
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.0e-24 114.8 218 41.3
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 7.0e-24 114.8 218 41.3
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 7.0e-24 114.8 181 45.3
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.7e-23 112.8 210 40.0
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 2.7e-23 112.8 187 42.2
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.5e-23 112.5 188 46.3
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 3.5e-23 112.5 220 40.5
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 4.5e-23 112.1 134 50.0
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 5.9e-23 111.7 194 44.8
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.7e-22 110.2 209 42.1
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 1.7e-22 110.2 205 42.9
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 2.3e-22 109.8 217 40.1
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 3.8e-22 109.0 187 41.2
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 5.0e-22 108.6 231 39.0
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 6.6e-22 108.2 187 44.9
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 6.6e-22 108.2 195 41.5
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 6.6e-22 108.2 204 40.2
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 6.6e-22 108.2 188 45.7
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.1e-21 107.5 184 45.1
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.1e-21 107.5 205 40.5
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.1e-21 107.5 169 46.2
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.9e-21 106.7 187 43.3
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 2.5e-21 106.3 224 38.4
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 2.5e-21 106.3 212 40.1
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 3.3e-21 105.9 210 38.1
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 3.3e-21 105.9 236 39.8
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 3.3e-21 105.9 220 39.5
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 5.6e-21 105.1 215 39.1
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 5.6e-21 105.1 238 37.4
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 7.3e-21 104.8 189 39.7
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 9.5e-21 104.4 206 39.3
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 9.5e-21 104.4 227 37.9
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 9.5e-21 104.4 200 40.5
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.5e-21 104.4 180 42.2
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 2.1e-20 103.2 210 39.0
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 2.8e-20 102.8 214 38.3
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 3.6e-20 102.4 195 43.6
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.7e-20 102.1 137 50.4
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 6.1e-20 101.7 217 37.8
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 1.0e-19 100.9 141 49.6
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.0e-19 100.9 210 38.6
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.8e-19 100.1 136 50.0
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 2.3e-19 99.8 185 39.5
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.0e-19 99.4 149 47.7
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 4.0e-19 99.0 192 39.1
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 6.8e-19 98.2 200 39.0
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 8.9e-19 97.8 201 40.3
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 8.9e-19 97.8 198 38.4
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.2e-18 97.4 193 39.4
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-18 97.4 193 39.4
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.2e-18 97.4 193 39.4
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.2e-18 97.4 223 35.9
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 2.0e-18 96.7 189 38.1
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 2.0e-18 96.7 189 38.1
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 5.7e-18 95.1 180 38.9
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 5.7e-18 95.1 198 42.9
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 7.5e-18 94.7 135 47.4
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 7.5e-18 94.7 179 41.9
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 7.5e-18 94.7 212 36.8
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 9.8e-18 94.4 185 40.0
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.7e-17 93.6 179 41.3
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.7e-17 93.6 223 39.0
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 2.2e-17 93.2 182 36.8
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 2.2e-17 93.2 182 36.8
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.2e-17 93.2 180 37.2
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 2.9e-17 92.8 192 40.6
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 2.9e-17 92.8 182 37.4
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 3.7e-17 92.4 192 41.7
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 3.7e-17 92.4 192 41.7
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 3.7e-17 92.4 192 40.6
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 4.9e-17 92.0 185 38.9
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 4.9e-17 92.0 192 41.7
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 6.4e-17 91.7 110 48.2
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 6.4e-17 91.7 215 36.7
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.4e-16 90.5 116 49.1
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.4e-16 90.5 185 37.3
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 1.8e-16 90.1 185 37.8
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.8e-16 90.1 184 38.6
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.8e-16 90.1 184 38.6
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.8e-16 90.1 189 39.2
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.4e-16 89.7 200 35.5
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.4e-16 89.7 200 35.5
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 3.2e-16 89.4 191 38.7
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 3.2e-16 89.4 184 38.0
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 3.2e-16 89.4 184 38.0
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 4.1e-16 89.0 183 37.7
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.0e-15 86.7 224 36.2
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 4.6e-15 85.5 122 46.7
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 7.8e-15 84.7 180 37.2
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 1.7e-14 83.6 130 43.8
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 3.0e-14 82.8 182 37.4
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 8.6e-14 81.3 199 38.2
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.5e-13 80.5 120 44.2
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 1.9e-13 80.1 185 37.8
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 3.3e-13 79.3 189 30.7
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 4.3e-13 79.0 145 40.0
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 5.6e-13 78.6 141 39.0
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 7.3e-13 78.2 194 36.6
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 2.8e-12 76.3 216 31.5
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 2.8e-12 76.3 121 47.1
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 1.4e-11 73.9 210 31.9
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 1.4e-11 73.9 167 39.5
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 1.8e-11 73.6 186 35.5
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.8e-11 73.6 118 43.2
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.3e-11 73.2 206 32.5
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 5.2e-11 72.0 214 34.1
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 6.8e-11 71.6 213 33.8
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 8.9e-11 71.2 238 32.8
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 8.9e-11 71.2 51 64.7
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.2e-10 70.9 149 37.6
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.5e-10 70.5 50 68.0
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 3.4e-10 69.3 162 32.7
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 4.4e-10 68.9 49 65.3
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 9.8e-10 67.8 186 32.3
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 9.8e-10 67.8 45 71.1
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 1.7e-09 67.0 241 32.0
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 2.2e-09 66.6 107 41.1
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.2e-09 66.6 110 40.9
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 8.3e-09 64.7 200 32.0
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.4e-08 63.9 157 38.2
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 2.4e-08 63.2 181 32.6
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 2.0e-07 60.1 223 32.3
Aqoxy7G02985 Aquilegia oxysepala HOM05D007665 ORTHO05D008293 4.6e-07 58.9 55 49.1
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 4.6e-07 58.9 199 27.6
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 7.8e-07 58.2 42 64.3
Dinv19563 Davidia involucrata HOM05D007665 ORTHO05D008293 1.0e-06 57.8 223 28.7
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.0e-06 57.8 140 40.0
BcaC04g19976 Brassica carinata HOM05D010683 ORTHO05D008293 1.3e-06 57.4 186 30.1
C09p49230 Brassica napus HOM05D010683 ORTHO05D008293 1.3e-06 57.4 186 30.1
BolC9t57773H Brassica oleracea HOM05D010683 ORTHO05D008293 1.3e-06 57.4 186 30.1
PSO063G5967 Papaver somniferum HOM05D007665 ORTHO05D008293 1.3e-06 57.4 42 64.3
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 1.3e-06 57.4 153 34.6
ATR0111G010 Amborella trichopoda HOM05D001536 ORTHO05D001442 2.3e-06 56.6 38 65.8
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 2.3e-06 56.6 42 61.9
Thecc.09G178300 Theobroma cacao HOM05D007665 ORTHO05D008293 3.0e-06 56.2 224 29.5
Zm00001eb050120 Zea mays HOM05D004032 ORTHO05D004462 3.0e-06 56.2 34 73.5
TPR.G5363 Trifolium pratense HOM05D007665 ORTHO05D008293 3.9e-06 55.8 112 34.8
ATR0580G179 Amborella trichopoda HOM05D007665 ORTHO05D008293 5.0e-06 55.5 170 31.2
MBI16_g38083_MAGBIO Magnolia biondii HOM05D007665 ORTHO05D008293 5.0e-06 55.5 57 47.4
Zm00001eb020730 Zea mays HOM05D004032 ORTHO05D004462 6.6e-06 55.1 38 65.8
COL.COLO4_27938 Corchorus olitorius HOM05D001536 ORTHO05D001442 8.6e-06 54.7 38 68.4
Dinv10677 Davidia involucrata HOM05D001536 ORTHO05D001442 8.6e-06 54.7 38 65.8


User provided reference genes

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