Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 2.1e-247 858.6 445 100.0
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 8.4e-236 820.1 444 95.3
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 5.2e-169 598.2 437 71.6
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 4.4e-168 595.1 444 70.3
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 9.1e-166 587.4 436 71.6
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 5.9e-165 584.7 436 70.9
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 7.7e-165 584.3 435 71.0
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 5.0e-164 581.6 437 69.6
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 8.5e-164 580.9 437 69.3
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.2e-162 577.0 439 70.2
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.6e-162 576.6 428 71.3
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 2.1e-162 576.2 431 69.6
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 2.7e-162 575.9 450 68.7
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 3.6e-162 575.5 430 70.9
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 4.7e-162 575.1 431 69.6
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.5e-160 570.1 436 68.6
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.3e-159 567.0 433 70.0
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.3e-159 567.0 438 68.0
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.7e-159 566.6 431 69.8
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.7e-159 565.5 436 68.6
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 6.3e-159 564.7 436 68.6
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 6.3e-159 564.7 440 68.9
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 2.4e-158 562.8 443 67.7
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 3.1e-158 562.4 414 70.5
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 7.7e-157 557.8 439 65.8
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 3.8e-156 555.4 436 67.2
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 6.6e-156 554.7 435 67.4
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.5e-155 552.7 432 68.3
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 4.2e-155 552.0 438 67.4
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 5.5e-155 551.6 437 67.3
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 7.2e-155 551.2 434 67.1
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.1e-154 549.7 433 69.1
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 4.7e-154 548.5 435 67.6
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 1.4e-153 547.0 430 67.2
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 1.8e-153 546.6 431 68.2
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 3.0e-153 545.8 434 67.5
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 5.2e-153 545.0 433 66.7
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 5.2e-153 545.0 436 65.8
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 6.8e-153 544.7 432 67.1
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 3.4e-152 542.3 430 66.5
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 2.2e-151 539.7 429 68.1
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 2.8e-151 539.3 430 67.2
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.8e-150 536.6 435 66.9
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 1.8e-150 536.6 439 64.5
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 9.2e-150 534.3 429 63.9
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 2.0e-149 533.1 434 64.7
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 1.0e-148 530.8 437 66.6
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 1.3e-148 530.4 437 64.5
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.7e-148 530.0 428 65.7
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 1.7e-148 530.0 429 65.7
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 2.9e-148 529.3 431 65.7
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 2.9e-148 529.3 431 66.4
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 3.9e-148 528.9 433 64.7
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 8.6e-148 527.7 430 64.9
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 1.1e-147 527.3 432 64.8
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.9e-147 526.6 430 64.7
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 4.3e-147 525.4 438 64.2
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 4.3e-147 525.4 438 64.2
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 5.6e-147 525.0 462 63.9
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 9.5e-147 524.2 432 65.0
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.2e-146 523.9 422 66.1
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 2.1e-146 523.1 432 65.0
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.1e-146 523.1 435 62.1
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 3.6e-146 522.3 432 65.0
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 4.7e-146 521.9 441 64.6
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 6.1e-146 521.5 432 64.8
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 4.0e-145 518.8 431 64.5
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.2e-144 517.3 447 62.4
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 1.2e-144 517.3 431 61.5
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 2.6e-144 516.2 435 65.5
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 7.5e-144 514.6 435 65.3
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 9.8e-144 514.2 434 64.5
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.2e-143 513.1 434 65.7
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.4e-142 508.4 517 55.9
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 1.6e-141 506.9 444 63.7
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 2.0e-141 506.5 440 61.8
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.0e-141 506.5 443 63.4
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 3.5e-141 505.8 432 65.3
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 4.6e-141 505.4 371 70.4
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 4.6e-141 505.4 443 62.1
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 7.8e-141 504.6 443 62.5
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.0e-140 504.2 414 63.3
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 3.9e-140 502.3 413 65.9
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 5.0e-140 501.9 436 63.3
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 2.5e-139 499.6 429 64.1
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 2.8e-138 496.1 438 62.3
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 2.8e-138 496.1 445 61.8
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 3.6e-138 495.7 431 59.9
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.4e-137 493.8 435 61.8
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 8.9e-137 491.1 430 59.3
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 1.2e-136 490.7 440 60.7
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 2.6e-136 489.6 414 63.5
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 9.8e-136 487.6 443 62.1
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.7e-135 486.9 433 61.4
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 6.4e-135 485.0 428 61.0
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 1.1e-134 484.2 442 60.6
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 3.2e-134 482.6 435 61.4
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 3.2e-134 482.6 472 59.1
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 7.0e-134 481.5 443 58.7
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.2e-133 480.7 431 60.6
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 2.1e-133 479.9 446 60.5
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.0e-132 477.6 426 60.1
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 2.5e-131 473.0 433 58.9
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.2e-130 470.7 429 61.8
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 2.1e-130 469.9 391 62.9
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 2.8e-130 469.5 446 59.2
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.1e-129 467.6 413 61.3
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 2.3e-129 466.5 421 62.9
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.6e-128 463.0 414 60.9
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 7.5e-128 461.5 448 57.6
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 1.1e-126 457.6 435 57.7
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.3e-124 450.7 431 59.2
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 4.7e-122 442.2 438 54.6
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 4.7e-122 442.2 432 56.5
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 7.6e-120 434.9 371 62.8
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.3e-119 434.1 434 54.8
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.8e-119 432.6 433 57.5
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.2e-118 429.1 432 59.0
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 3.0e-116 422.9 443 56.0
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 8.1e-114 414.8 519 50.1
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 3.5e-109 399.4 301 65.4
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 5.6e-107 392.1 313 67.4
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.4e-102 377.5 434 51.8
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 3.2e-102 376.3 378 59.3
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.4e-97 360.9 350 56.9
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 7.6e-96 355.1 308 61.4
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.3e-95 354.4 449 49.0
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 6.0e-93 345.5 411 47.4
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.4e-89 334.3 303 59.7
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 1.2e-88 331.3 448 44.6
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.6e-80 303.5 250 64.8
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.3e-75 286.6 325 51.7
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 4.3e-75 286.2 415 45.5
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 9.1e-73 278.5 177 78.0
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 4.5e-64 249.6 177 72.3
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.1e-62 245.0 198 69.7
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.7e-56 222.2 177 61.6
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 3.0e-52 210.3 196 60.2
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.2e-51 208.4 186 61.3
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.6e-45 186.8 160 66.2
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 8.3e-42 175.6 242 46.3
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.4e-41 174.1 139 61.9
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.2e-38 163.3 147 66.0
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 5.4e-33 146.4 120 70.8
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 1.9e-30 137.9 112 66.1
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 2.0e-27 127.9 86 70.9
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 5.0e-23 113.2 88 62.5
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 4.0e-20 103.6 168 40.5
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.8e-19 99.8 106 52.8
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.1e-17 95.5 113 49.6
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.5e-14 85.1 397 23.9
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 5.6e-14 83.2 118 49.2
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 5.2e-12 76.6 403 25.8
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 7.1e-09 66.2 51 60.8


User provided reference genes

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