Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 0.0e+00 1831.2 1254 100.0
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 3.9e-206 723.0 1037 45.4
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 9.7e-205 718.4 1039 50.5
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 7.9e-191 672.2 1042 44.2
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 2.0e-189 667.5 1023 44.5
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 7.4e-189 665.6 1012 42.1
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 4.1e-187 659.8 998 49.1
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 4.1e-187 659.8 1033 43.1
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 7.7e-186 655.6 1008 39.8
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.9e-185 653.7 1005 43.6
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 2.3e-182 644.0 1026 38.5
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 8.5e-177 625.5 991 51.4
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 1.5e-176 624.8 1043 39.6
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 4.7e-175 619.8 1006 40.1
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 8.0e-175 619.0 1036 45.8
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 1.8e-174 617.8 1020 44.3
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 1.7e-172 611.3 1018 46.9
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.4e-171 607.4 993 47.9
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 4.1e-171 606.7 952 43.2
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 3.8e-169 600.1 986 45.8
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 3.6e-167 593.6 1045 44.9
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 1.4e-166 591.7 1013 40.4
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 1.2e-165 588.6 1034 41.4
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 4.8e-164 583.2 1035 39.0
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 3.1e-163 580.5 988 43.5
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 1.2e-159 568.5 1079 39.9
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.6e-159 568.2 1007 40.5
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 1.0e-158 565.5 1032 37.4
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 5.2e-158 563.1 1033 40.6
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 4.4e-157 560.1 1022 39.1
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 9.8e-157 558.9 1025 40.9
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 5.0e-153 546.6 1084 39.2
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 6.1e-151 539.7 1039 43.4
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 1.2e-149 535.4 1035 39.2
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 2.0e-149 534.6 1044 40.1
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 3.4e-149 533.9 1031 43.8
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 5.8e-149 533.1 992 40.0
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 1.4e-147 528.5 993 40.6
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 3.2e-147 527.3 877 42.5
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 4.1e-147 526.9 1013 39.9
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 3.9e-145 520.4 1049 39.2
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 3.3e-144 517.3 1019 36.2
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 1.1e-142 512.3 996 36.3
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 1.1e-142 512.3 1078 39.7
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 2.3e-142 511.1 999 37.4
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 6.8e-142 509.6 1015 35.7
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 4.4e-141 506.9 976 39.9
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 5.8e-141 506.5 1042 40.3
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 7.0e-139 499.6 804 43.0
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 2.7e-138 497.7 996 39.4
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 4.6e-138 496.9 884 36.2
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 6.0e-138 496.5 693 48.3
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 2.3e-137 494.6 989 40.4
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 3.9e-137 493.8 1044 37.9
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 4.3e-136 490.3 757 46.9
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 4.7e-135 486.9 1037 37.4
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 5.2e-134 483.4 1036 37.1
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 1.2e-133 482.3 1024 33.8
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 3.4e-133 480.7 786 35.0
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 6.4e-132 476.5 649 49.3
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 1.3e-129 468.8 798 36.1
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 4.3e-128 463.8 1046 38.0
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 3.1e-126 457.6 636 50.6
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 1.9e-123 448.4 718 44.4
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 1.9e-123 448.4 705 35.9
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 5.4e-123 446.8 723 35.3
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 3.5e-122 444.1 1013 33.8
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 4.6e-122 443.7 1013 33.9
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 1.7e-121 441.8 1013 33.7
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 2.3e-121 441.4 914 37.7
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 1.5e-120 438.7 738 34.3
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 1.6e-119 435.3 738 34.7
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 6.2e-119 433.3 915 38.1
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 3.1e-118 431.0 1011 37.6
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 1.3e-116 425.6 970 36.4
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 1.1e-115 422.5 703 40.0
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 3.6e-111 407.5 1014 33.8
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 3.3e-104 384.4 952 27.4
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 5.6e-104 383.6 999 32.6
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 1.6e-103 382.1 697 44.8
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 3.7e-103 380.9 738 43.1
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 3.0e-97 361.3 769 42.0
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 1.5e-93 349.0 655 42.9
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 1.3e-92 345.9 1041 25.7
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 2.3e-89 335.1 406 45.1
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 3.4e-85 321.2 963 38.5
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 3.8e-84 317.8 652 29.0
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.1e-78 298.1 585 44.1
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 1.4e-75 289.3 902 26.1
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 7.2e-75 287.0 758 29.3
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 1.3e-60 239.6 603 30.5
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.2e-59 235.0 278 45.7
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 4.7e-58 231.1 349 53.0
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 8.8e-49 200.3 349 50.1
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 1.6e-45 189.5 205 48.3
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 1.6e-45 189.5 212 46.2
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 9.5e-43 180.3 593 25.6
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 9.5e-43 180.3 589 25.8
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 1.5e-40 172.9 188 46.3
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 3.2e-38 165.2 184 47.8
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 2.9e-31 142.1 411 39.7
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 1.9e-30 139.4 151 46.4
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.4e-30 139.0 156 46.2
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 1.6e-29 136.3 156 45.5
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 2.2e-23 115.9 331 28.4
Medtr3g052970 Medicago truncatula HOM05D006569 ORTHO05D007515 1.2e-18 100.1 113 44.2
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 2.1e-18 99.4 150 34.0
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 2.0e-16 92.8 434 23.0
HanXRQChr05g0134551 Helianthus annuus HOM05D006569 ORTHO05D007515 4.4e-16 91.7 93 49.5
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.7e-15 89.7 140 37.9
SEGI_17455 Sequoiadendron giganteum HOM05D006569 ORTHO05D007515 8.4e-15 87.4 532 37.8
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 9.2e-14 84.0 120 45.0
FAN09G4849 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.0e-12 79.0 89 44.9
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 1.1e-11 77.0 170 27.1
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 1.9e-11 76.3 119 34.5
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 2.0e-08 66.2 171 28.7
SalBow2G3131 Salvia bowleyana HOM05D000891 ORTHO05D000761 2.0e-08 66.2 129 25.6
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 4.4e-08 65.1 195 25.1
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 5.8e-08 64.7 207 26.6
Lalb_Chr14g0373751 Lupinus albus HOM05D000891 ORTHO05D000761 1.7e-07 63.2 139 25.2
Lsat_1_v5_gn_1_46480 Lactuca sativa HOM05D001126 ORTHO05D000991 2.2e-07 62.8 96 37.5
Prupe.3G083000 Prunus persica HOM05D000891 ORTHO05D000761 2.2e-07 62.8 127 25.2
Aa31LG4G440 Aethionema arabicum HOM05D000891 ORTHO05D000761 2.9e-07 62.4 136 25.0
CDE02G2552 Ceratophyllum demersum HOM05D000891 ORTHO05D000761 4.9e-07 61.6 142 29.6
Migut.D01063 Erythranthe guttata HOM05D000891 ORTHO05D000761 4.9e-07 61.6 122 27.9
Oeu004580.1 Olea europaea HOM05D005622 ORTHO05D002854 4.9e-07 61.6 219 24.7
MSTRG.4712 Avicennia marina HOM05D000891 ORTHO05D000761 6.4e-07 61.2 122 27.9
Zm00001eb227290 Zea mays HOM05D000891 ORTHO05D000761 6.4e-07 61.2 126 24.6
HanXRQChr16g0524351 Helianthus annuus HOM05D006569 ORTHO05D007515 8.4e-07 60.8 93 31.2
SalBow2G1681 Salvia bowleyana HOM05D000891 ORTHO05D000761 8.4e-07 60.8 119 25.2
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 1.1e-06 60.5 253 26.9
Sp5g35650 Schrenkiella parvula HOM05D000891 ORTHO05D000761 1.1e-06 60.5 139 24.5
SEGI_26115 Sequoiadendron giganteum HOM05D006819 ORTHO05D008763 1.1e-06 60.5 192 24.0
BcaB05g25293 Brassica carinata HOM05D000891 ORTHO05D000761 1.9e-06 59.7 139 25.9
CsaV3_3G041130 Cucumis sativus L. HOM05D000891 ORTHO05D011021 1.9e-06 59.7 140 27.9
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 2.4e-06 59.3 222 25.2
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 2.4e-06 59.3 124 27.4
arahy.Tifrunner.gnm1.ann1.B0BY4Q Arachis hypogaea HOM05D000891 ORTHO05D000761 3.2e-06 58.9 125 24.0
arahy.Tifrunner.gnm1.ann1.LDS0KH Arachis hypogaea HOM05D000891 ORTHO05D000761 3.2e-06 58.9 125 24.0
Thhalv10018671m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 3.2e-06 58.9 139 24.5
Gohir.D06G192800 Gossypium hirsutum HOM05D000891 ORTHO05D000761 3.2e-06 58.9 150 24.7
BcaB02g07294 Brassica carinata HOM05D000891 ORTHO05D000761 5.4e-06 58.2 134 25.4
arahy.Tifrunner.gnm1.ann1.EU7MKH Arachis hypogaea HOM05D007202 ORTHO05D009125 7.1e-06 57.8 191 26.7
MBI05_g36422_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 7.1e-06 57.8 54 48.1


User provided reference genes

Program Settings