Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1904.0 964 100.0
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1676.8 963 87.3
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1651.7 975 85.9
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1648.6 969 86.6
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1644.4 980 85.3
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1644.0 976 84.8
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1640.6 958 86.4
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1630.2 959 86.0
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1629.8 963 85.7
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1627.1 964 85.1
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1626.3 970 86.5
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1625.1 975 85.5
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1623.6 947 86.9
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1619.4 969 85.8
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1618.6 974 85.3
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1614.4 950 86.2
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1613.2 978 84.0
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1611.3 987 83.0
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1610.9 968 84.1
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1608.2 890 90.0
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1607.0 981 83.6
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1606.7 967 85.3
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1603.6 958 84.4
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1602.4 967 84.1
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1602.0 950 85.7
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1601.3 957 84.4
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1599.7 974 83.9
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1599.3 977 83.5
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1596.6 969 84.4
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1595.5 995 82.0
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1594.7 973 83.8
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1593.9 969 83.7
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1592.0 875 90.5
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1590.9 967 84.0
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1590.9 969 83.4
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1583.5 910 87.7
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1578.1 926 86.8
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1575.8 973 82.6
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1572.0 974 82.4
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1568.9 938 85.2
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1567.4 875 88.5
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1567.4 972 81.5
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1563.5 891 88.1
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1562.0 892 88.0
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1561.6 889 86.8
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1558.9 970 81.9
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1556.6 891 87.9
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1555.8 906 86.0
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1553.9 899 86.1
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1552.0 891 87.1
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1551.2 964 81.8
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1550.8 964 81.0
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1550.8 872 88.2
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1550.8 918 85.6
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1550.0 1001 80.2
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1547.7 934 83.8
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1547.7 916 85.0
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1547.7 916 85.0
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1546.9 933 84.6
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1545.8 980 80.8
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1542.3 976 80.6
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1540.4 874 87.3
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1534.2 950 80.4
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1532.3 891 85.6
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1531.2 965 80.1
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1529.6 963 80.4
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1528.8 871 87.6
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1524.2 856 88.8
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1523.5 871 86.7
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1521.9 965 79.8
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1520.8 972 79.5
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1520.0 858 88.2
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1519.6 858 87.5
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1519.2 892 85.4
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1516.9 874 85.7
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1516.5 963 79.4
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1516.5 844 89.3
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1516.1 874 86.2
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1513.8 972 78.7
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1513.0 875 84.7
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1512.3 972 78.8
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1512.3 879 86.8
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1511.9 946 81.2
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1511.5 963 79.2
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1511.5 963 79.2
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1510.0 939 80.8
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1508.0 950 82.0
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1507.7 972 78.5
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1507.3 935 80.1
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1506.9 972 78.4
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1506.9 841 88.9
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1505.3 856 87.9
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1504.2 880 84.4
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1503.0 935 79.9
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1501.9 852 88.3
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1501.5 875 84.7
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1500.3 875 84.3
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1499.6 946 80.2
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 958 78.5
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1492.2 903 83.3
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1485.7 871 84.4
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1482.6 892 82.5
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 903 82.8
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1478.4 958 80.4
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1471.1 883 81.5
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1465.3 1061 73.5
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1464.5 894 80.5
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1462.2 858 84.3
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1456.0 961 77.3
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1454.5 844 84.2
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1443.3 903 80.6
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1427.5 893 78.8
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1421.8 882 81.9
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1419.1 889 79.0
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1415.2 864 80.7
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1407.5 774 90.3
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1399.8 889 77.6
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1391.7 872 78.2
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1384.0 823 82.7
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1382.9 903 78.5
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1379.8 877 80.0
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1375.9 874 80.1
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1370.1 803 85.9
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1370.1 806 83.6
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1340.9 884 79.6
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1322.8 879 78.8
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1316.6 822 81.5
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1289.6 876 75.9
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1233.0 777 79.7
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1232.6 727 82.9
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1210.7 874 72.0
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1191.8 876 68.0
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1191.8 856 68.6
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1110.9 633 86.1
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 4.5e-303 1044.6 581 88.1
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 7.7e-303 1043.9 882 59.9
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 6.6e-278 961.1 623 78.8
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 1.8e-259 899.8 909 53.8
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.2e-226 790.8 540 75.9
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.8e-226 788.5 516 77.7
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.2e-216 755.0 505 77.8
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.5e-194 682.6 451 77.6
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 7.7e-194 681.8 410 82.9
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 5.2e-190 669.1 744 50.8
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 3.0e-166 590.1 467 67.7
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 3.5e-162 576.6 338 85.2
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 3.2e-139 500.4 293 85.0
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 1.0e-137 495.4 391 66.5
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.5e-112 411.8 423 55.1
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 6.7e-105 386.3 318 66.7
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 1.1e-94 352.4 232 76.3
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 2.7e-90 337.8 258 68.6
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 1.6e-69 268.9 227 65.2
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-64 252.7 216 63.0
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.2e-58 232.6 151 76.2
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 6.1e-50 203.8 119 81.5
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 3.5e-45 188.0 268 44.8
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.4e-38 165.2 114 71.1
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 6.8e-33 147.1 85 84.7
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.3e-31 142.9 88 78.4
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 2.9e-31 141.7 81 86.4
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 8.3e-31 140.2 83 81.9
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 3.1e-25 121.7 130 55.4
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-24 119.8 95 67.4
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 3.8e-23 114.8 441 26.5
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 3.6e-18 98.2 56 78.6
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 2.6e-16 92.0 60 70.0
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.0e-12 80.1 57 70.2
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 2.5e-11 75.5 49 75.5
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 4.3e-11 74.7 46 78.3
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 1.1e-09 70.1 43 74.4
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 1.4e-09 69.7 119 40.3
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 1.4e-09 69.7 46 73.9
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 9.0e-09 67.0 43 72.1
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 3.4e-08 65.1 76 53.9


User provided reference genes

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