Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 9.2e-152 540.4 320 100.0
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.2e-29 134.8 365 36.2
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 5.4e-27 125.9 344 35.8
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 7.1e-27 125.6 336 36.6
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.2e-26 124.8 138 53.6
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.7e-26 123.6 359 35.7
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 4.6e-26 122.9 342 35.4
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 4.6e-26 122.9 382 34.3
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 4.6e-26 122.9 113 62.8
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.0e-25 121.7 129 55.8
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 1.3e-25 121.3 363 35.0
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 1.3e-25 121.3 136 57.4
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 1.7e-25 120.9 365 35.1
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 1.7e-25 120.9 162 46.3
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 3.9e-25 119.8 137 53.3
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 3.9e-25 119.8 128 57.0
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 5.1e-25 119.4 151 51.7
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 5.1e-25 119.4 337 40.4
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.6e-25 119.0 141 55.3
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 6.6e-25 119.0 141 55.3
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 6.6e-25 119.0 131 51.1
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 6.6e-25 119.0 133 53.4
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 8.6e-25 118.6 133 55.6
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 8.6e-25 118.6 367 38.4
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 8.6e-25 118.6 144 51.4
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 8.6e-25 118.6 131 56.5
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 1.1e-24 118.2 125 56.0
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 1.5e-24 117.9 402 31.8
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 1.5e-24 117.9 365 33.2
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.9e-24 117.5 308 36.0
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 2.5e-24 117.1 171 45.6
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 2.5e-24 117.1 151 48.3
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.3e-24 116.7 154 50.6
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 3.3e-24 116.7 131 54.2
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 4.3e-24 116.3 357 33.9
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 4.3e-24 116.3 114 58.8
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 5.6e-24 115.9 148 50.7
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 5.6e-24 115.9 154 50.0
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 5.6e-24 115.9 154 50.0
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 5.6e-24 115.9 126 54.8
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 7.3e-24 115.5 158 48.1
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 9.5e-24 115.2 151 47.0
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 1.2e-23 114.8 380 34.7
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.2e-23 114.8 130 53.1
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.2e-23 114.8 132 54.5
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.6e-23 114.4 129 55.0
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 2.8e-23 113.6 137 51.8
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.8e-23 113.6 367 39.2
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.6e-23 113.2 371 32.9
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 3.6e-23 113.2 155 47.7
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 4.7e-23 112.8 149 49.7
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 4.7e-23 112.8 138 49.3
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 6.2e-23 112.5 323 33.7
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 8.1e-23 112.1 141 49.6
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 8.1e-23 112.1 144 51.4
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.1e-22 111.7 350 36.0
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 1.4e-22 111.3 148 49.3
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 2.4e-22 110.5 336 32.7
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 2.4e-22 110.5 323 34.1
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 2.4e-22 110.5 395 32.7
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.4e-22 110.5 117 57.3
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 3.1e-22 110.2 131 52.7
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 4.0e-22 109.8 294 36.1
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 4.0e-22 109.8 371 32.6
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 5.2e-22 109.4 350 32.9
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 6.8e-22 109.0 325 33.5
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 1.2e-21 108.2 124 51.6
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 1.2e-21 108.2 387 33.1
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 2.0e-21 107.5 196 42.9
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 2.6e-21 107.1 131 49.6
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 2.6e-21 107.1 103 56.3
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 3.4e-21 106.7 172 41.9
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 3.4e-21 106.7 134 50.7
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 3.4e-21 106.7 329 34.3
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 5.8e-21 105.9 109 55.0
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.8e-21 105.9 307 35.2
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 5.8e-21 105.9 307 34.5
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 5.8e-21 105.9 106 54.7
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 7.6e-21 105.5 169 45.0
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 7.6e-21 105.5 137 48.9
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 7.6e-21 105.5 124 52.4
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 9.9e-21 105.1 166 45.2
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 1.3e-20 104.8 142 49.3
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.2e-20 104.0 114 53.5
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 2.2e-20 104.0 327 33.3
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 2.2e-20 104.0 115 55.7
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 3.8e-20 103.2 121 52.1
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 4.9e-20 102.8 130 47.7
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 6.4e-20 102.4 142 47.9
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.4e-20 102.4 114 52.6
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 6.4e-20 102.4 126 50.0
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 8.4e-20 102.1 112 53.6
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 8.4e-20 102.1 121 50.4
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 1.1e-19 101.7 145 46.2
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 1.4e-19 101.3 128 50.8
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.4e-19 101.3 63 76.2
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.4e-19 101.3 63 76.2
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.9e-19 100.9 307 31.9
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 2.4e-19 100.5 106 53.8
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 3.2e-19 100.1 309 33.3
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 3.2e-19 100.1 113 50.4
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 4.1e-19 99.8 149 43.0
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 7.1e-19 99.0 120 50.0
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 9.2e-19 98.6 128 50.0
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 1.2e-18 98.2 134 47.0
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 1.6e-18 97.8 118 50.8
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.1e-18 97.4 135 48.1
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 2.7e-18 97.1 73 65.8
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.7e-18 97.1 160 39.4
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.7e-18 97.1 67 70.1
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 3.5e-18 96.7 133 48.1
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 3.5e-18 96.7 149 44.3
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 4.6e-18 96.3 61 75.4
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 6.0e-18 95.9 122 50.0
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 7.8e-18 95.5 125 49.6
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 1.0e-17 95.1 107 55.1
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.3e-17 94.7 129 42.6
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.3e-17 94.7 131 45.8
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 1.7e-17 94.4 306 32.0
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 3.0e-17 93.6 119 47.1
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.0e-17 93.6 46 87.0
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 3.0e-17 93.6 327 33.6
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 3.9e-17 93.2 321 36.8
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.1e-17 92.8 114 49.1
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.6e-17 92.4 124 50.0
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.6e-17 92.4 143 42.7
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 6.6e-17 92.4 55 78.2
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 8.7e-17 92.0 302 34.8
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 1.1e-16 91.7 302 34.8
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 1.5e-16 91.3 73 64.4
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.9e-16 90.9 310 37.1
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.9e-16 90.9 130 44.6
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 2.5e-16 90.5 128 44.5
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.3e-16 90.1 50 82.0
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 4.3e-16 89.7 115 47.0
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 7.3e-16 89.0 125 44.0
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 9.6e-16 88.6 48 79.2
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.2e-15 88.2 337 31.5
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.6e-15 87.8 114 45.6
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 2.1e-15 87.4 302 30.8
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 2.1e-15 87.4 137 41.6
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 3.6e-15 86.7 306 33.3
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 3.6e-15 86.7 113 46.0
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 4.7e-15 86.3 308 34.1
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 4.7e-15 86.3 308 34.1
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 4.7e-15 86.3 308 34.1
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.1e-14 85.1 41 85.4
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.8e-14 84.3 73 53.4
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 3.1e-14 83.6 107 49.5
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 4.0e-14 83.2 49 73.5
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 9.0e-14 82.0 56 71.4
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 1.5e-13 81.3 114 43.0
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.6e-13 80.5 70 54.3
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 2.6e-13 80.5 47 78.7
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 2.6e-13 80.5 52 75.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 2.2e-12 77.4 305 28.2
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 1.4e-11 74.7 309 29.1
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 3.2e-11 73.6 43 76.7
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.6e-10 71.2 39 76.9
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.5e-10 70.1 39 74.4
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 4.6e-10 69.7 98 46.9
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.3e-09 68.2 76 42.1
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 8.7e-09 65.5 39 69.2
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.3e-08 63.5 37 70.3
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 9.6e-08 62.0 48 52.1
Duzib093G0164 Durio zibethinus HOM05D014635 ORTHO05D014310 3.6e-07 60.1 107 36.4
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.8e-06 57.8 68 44.1
Pp3c8_12340 Physcomitrium patens HOM05D024220 ORTHO05D013169 4.0e-06 56.6 103 31.1
Pp3c8_12344 Physcomitrium patens HOM05D024220 ORTHO05D013169 4.0e-06 56.6 103 31.1


User provided reference genes

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