Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0115 Punica granatum HOM05D006511 ORTHO05D007567 5.4e-142 507.7 260 100.0
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 5.5e-46 188.7 246 45.1
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 9.4e-46 188.0 244 44.3
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 9.4e-46 188.0 243 44.0
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 1.6e-45 187.2 247 44.1
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 1.6e-45 187.2 246 45.1
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 1.2e-43 181.0 225 45.8
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 2.0e-43 180.3 247 42.5
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 3.3e-43 179.5 247 43.7
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 4.4e-43 179.1 247 45.3
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 2.8e-42 176.4 247 44.1
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 4.8e-42 175.6 231 43.3
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.1e-41 174.5 247 44.1
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 3.1e-41 172.9 238 44.1
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 5.3e-41 172.2 241 42.7
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 1.2e-40 171.0 241 42.3
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 2.0e-40 170.2 248 41.1
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 2.0e-40 170.2 222 44.6
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 2.7e-40 169.9 245 42.4
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 5.9e-40 168.7 247 41.7
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 3.8e-39 166.0 255 41.6
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 3.8e-39 166.0 248 41.9
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 6.5e-39 165.2 247 41.3
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 8.5e-39 164.9 247 41.3
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 1.9e-38 163.7 222 42.3
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 4.2e-38 162.5 228 40.4
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 5.5e-38 162.2 251 40.2
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 1.6e-37 160.6 247 38.9
Hma1.2p1_1405F.1_g281380 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 4.7e-37 159.1 147 57.1
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 8.0e-37 158.3 243 39.5
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 1.4e-36 157.5 253 39.1
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 6.8e-36 155.2 224 41.5
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 6.8e-36 155.2 238 40.8
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 6.8e-36 155.2 253 38.7
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 1.2e-35 154.5 224 41.5
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 2.6e-35 153.3 222 41.9
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 2.6e-35 153.3 247 39.7
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 2.6e-35 153.3 228 37.7
FAN24G3334 Fragaria x ananassa HOM05D006511 ORTHO05D007567 4.4e-35 152.5 225 42.7
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 4.4e-35 152.5 246 40.7
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 4.4e-35 152.5 235 39.1
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 5.7e-35 152.1 224 41.1
FvH4_2g04930 Fragaria vesca HOM05D006511 ORTHO05D007567 9.8e-35 151.4 216 43.5
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 2.8e-34 149.8 226 41.6
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 2.8e-34 149.8 230 39.1
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 4.8e-34 149.1 246 37.0
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 6.3e-34 148.7 222 40.5
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 1.4e-33 147.5 248 37.1
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 1.8e-33 147.1 222 42.3
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 1.8e-33 147.1 289 35.6
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 2.4e-33 146.7 239 40.2
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 5.4e-33 145.6 250 38.0
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 5.4e-33 145.6 250 38.0
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 1.2e-32 144.4 245 38.0
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 4.5e-32 142.5 247 38.1
Sc01g0000180 Simmondsia chinensis HOM05D006511 ORTHO05D007567 7.7e-32 141.7 126 58.7
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 1.0e-31 141.4 298 33.2
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 1.0e-31 141.4 248 38.3
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 1.3e-31 141.0 221 36.7
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 2.3e-31 140.2 232 38.8
FAN20G1821 Fragaria x ananassa HOM05D006511 ORTHO05D007567 2.9e-31 139.8 199 42.7
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 8.6e-31 138.3 278 32.4
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 3.3e-30 136.3 240 37.9
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 5.5e-30 135.6 258 34.9
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 7.2e-30 135.2 235 37.0
Medtr1g067720 Medicago truncatula HOM05D006511 ORTHO05D007567 8.0e-29 131.7 127 53.5
Eucgr.F04079 Eucalyptus grandis HOM05D006511 ORTHO05D007567 1.0e-28 131.3 128 58.6
arahy.Tifrunner.gnm1.ann1.VJ45CS Arachis hypogaea HOM05D006511 ORTHO05D007567 5.2e-28 129.0 127 52.8
Ciclev10023919m.g Citrus clementina HOM05D006511 ORTHO05D007567 1.2e-27 127.9 141 51.8
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 1.5e-27 127.5 242 36.8
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 3.4e-27 126.3 218 35.3
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 1.7e-26 124.0 134 52.2
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 4.9e-26 122.5 308 32.8
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 6.3e-26 122.1 252 34.1
Cc10_g16070 Coffea canephora HOM05D006511 ORTHO05D007567 2.4e-25 120.2 191 40.3
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 3.1e-25 119.8 221 34.8
COL.COLO4_05044 Corchorus olitorius HOM05D006511 ORTHO05D007567 3.1e-25 119.8 150 45.3
CDE10G1127 Ceratophyllum demersum HOM05D006511 ORTHO05D007567 5.0e-23 112.5 201 35.8
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 8.6e-23 111.7 270 33.3
HPP92_003819 Vanilla planifolia HOM05D006511 ORTHO05D007567 2.5e-22 110.2 226 33.6
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.0e-20 104.8 255 32.2
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.0e-20 104.8 255 32.2
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 3.0e-20 103.2 163 36.8
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 3.0e-20 103.2 136 47.1
EL10Ac1g01283 Beta vulgaris HOM05D006511 ORTHO05D007567 4.0e-20 102.8 229 32.8
Haze_13992 Corylus avellana HOM05D006511 ORTHO05D007567 6.8e-20 102.1 88 62.5
Os08g0320300 Oryza sativa ssp. japonica HOM05D006511 ORTHO05D007567 8.9e-20 101.7 129 44.2
CsaV3_2G033310 Cucumis sativus L. HOM05D006511 ORTHO05D007567 7.5e-19 98.6 258 30.6
AUR62013391 Chenopodium quinoa HOM05D006511 ORTHO05D007567 9.8e-19 98.2 208 30.8
COL.COLO4_05796 Corchorus olitorius HOM05D006511 ORTHO05D007567 4.1e-17 92.8 112 45.5
Atru.chr13.2578 Acer truncatum HOM05D006511 ORTHO05D007567 2.7e-16 90.1 247 31.2
unitig_749.g13868 Utricularia gibba HOM05D006511 ORTHO05D007567 2.3e-15 87.0 224 29.9
Nitab4.5_0001489g0030 Nicotiana tabacum HOM05D006511 ORTHO05D007567 1.1e-14 84.7 235 28.1
Peaxi162Scf00078g01026 Petunia axillaris HOM05D006511 ORTHO05D007567 2.8e-13 80.1 235 27.7
vmacro11027 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 8.9e-12 75.1 79 50.6
Lalb_Chr19g0131891 Lupinus albus HOM05D006511 ORTHO05D007567 4.4e-11 72.8 74 51.4
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 1.7e-10 70.9 209 26.3
Nitab4.5_0000009g0490 Nicotiana tabacum HOM05D006511 ORTHO05D007567 5.4e-09 65.9 49 69.4
SMO137G0232 Selaginella moellendorffii HOM05D006511 ORTHO05D007567 5.4e-09 65.9 125 31.2
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 7.0e-09 65.5 144 34.0
MSTRG.1607 Avicennia marina HOM05D006511 ORTHO05D007567 7.0e-09 65.5 139 29.5
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 1.2e-08 64.7 196 27.0
Lalb_Chr19g0131881 Lupinus albus HOM05D006511 ORTHO05D007567 2.7e-08 63.5 45 66.7
COL.COLO4_36458 Corchorus olitorius HOM05D006511 ORTHO05D007567 3.5e-08 63.2 80 40.0


User provided reference genes

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