Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1470.3 788 100.0
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1209.1 791 79.1
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1186.0 790 77.3
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1170.2 797 75.9
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1167.9 788 79.7
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1162.5 792 76.5
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1161.7 792 75.4
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1161.7 790 77.0
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1155.6 796 76.4
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1155.2 788 76.1
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1151.7 795 78.2
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1150.2 794 77.7
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1149.0 789 77.4
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1147.5 789 74.8
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1145.6 790 76.5
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1144.4 799 76.0
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1140.2 788 75.0
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1139.4 779 76.4
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1136.7 809 74.8
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1135.9 796 74.5
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1135.2 787 75.9
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1133.2 791 76.6
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1130.9 837 72.2
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1129.8 809 73.4
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1128.2 789 75.3
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1127.1 838 74.0
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1123.2 786 76.1
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1117.4 786 75.6
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1117.4 807 72.9
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1113.6 804 72.9
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1110.9 800 74.5
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1109.7 801 73.4
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1107.4 864 69.8
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1107.4 800 75.1
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1106.7 746 76.9
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1105.1 801 73.2
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1104.7 791 75.9
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1103.6 791 72.7
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1103.2 787 72.6
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1101.3 786 73.7
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1095.9 785 72.5
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1095.9 785 72.5
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1094.7 891 69.4
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1094.3 788 72.3
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1093.2 790 72.9
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1089.7 785 72.4
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1087.0 793 72.4
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1083.6 791 72.9
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1083.6 793 72.8
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1083.2 784 74.5
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1082.8 799 70.7
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1081.2 790 72.3
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1081.2 798 71.7
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1079.7 787 71.2
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1079.3 775 72.4
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1078.9 791 71.3
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 787 71.5
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1077.4 776 72.6
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 6.5e-311 1070.5 775 72.3
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 3.1e-310 1068.1 826 70.2
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 1.5e-309 1065.8 801 72.9
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 2.2e-308 1062.0 787 69.4
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.5e-307 1059.3 787 70.3
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 1.6e-306 1055.8 789 71.7
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 2.1e-306 1055.4 788 70.4
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 3.6e-306 1054.7 799 70.2
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 3.0e-305 1051.6 797 68.9
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 3.9e-305 1051.2 776 72.0
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 5.2e-305 1050.8 775 72.0
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 8.8e-305 1050.0 776 71.4
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 8.8e-305 1050.0 775 72.0
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 8.8e-305 1050.0 775 72.0
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 8.8e-305 1050.0 776 71.4
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 3.7e-303 1044.6 789 69.6
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 8.2e-303 1043.5 799 68.7
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.1e-302 1043.1 801 69.3
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 7.0e-302 1040.4 646 82.0
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 3.5e-301 1038.1 787 68.0
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.2e-298 1029.6 800 67.2
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 3.6e-298 1028.1 790 68.6
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 3.6e-298 1028.1 646 82.2
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 6.1e-298 1027.3 800 69.0
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.3e-297 1025.4 646 82.0
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 3.4e-296 1021.5 799 66.7
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 4.4e-296 1021.1 801 66.5
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 3.7e-295 1018.1 784 68.4
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 3.1e-294 1015.0 799 67.1
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.0e-292 1010.0 785 67.8
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 3.8e-292 1008.1 754 70.3
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 6.5e-292 1007.3 792 68.2
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 1.6e-290 1002.7 784 67.6
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 9.8e-288 993.4 776 67.8
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 9.8e-288 993.4 794 66.9
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 7.7e-285 983.8 793 67.6
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.6e-282 976.1 776 68.6
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 3.6e-282 974.9 774 67.8
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 5.7e-280 967.6 783 66.7
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 6.3e-279 964.1 774 68.1
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.0e-277 959.1 796 64.1
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 8.9e-273 943.7 775 64.8
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 7.5e-272 940.6 794 64.5
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 6.4e-271 937.6 775 65.9
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 1.0e-268 930.2 831 61.4
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.3e-263 913.3 798 61.0
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 1.9e-262 909.4 776 64.9
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 2.6e-256 889.0 778 63.0
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 6.4e-247 857.8 785 60.5
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 1.9e-246 856.3 817 57.4
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.7e-244 847.4 704 67.6
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 9.6e-243 844.0 806 57.1
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.6e-236 821.2 790 55.9
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 6.2e-234 814.7 637 69.4
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 8.2e-218 761.1 660 64.8
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 6.9e-209 731.5 480 80.8
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.3e-204 716.5 796 50.8
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.4e-188 664.1 840 46.9
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.4e-188 664.1 840 46.9
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 5.0e-175 619.0 619 56.5
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 5.5e-174 615.5 862 43.0
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.2e-173 614.4 839 44.8
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 7.0e-169 598.6 530 63.4
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 1.6e-168 597.4 459 68.0
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.0e-168 597.0 652 51.2
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.1e-161 574.7 434 69.4
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 4.7e-157 559.3 824 42.2
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 8.6e-151 538.5 584 52.6
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 9.9e-131 471.9 393 64.4
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 5.6e-110 402.9 616 45.1
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 3.4e-107 393.7 605 44.3
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.0e-82 312.4 214 77.1
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 1.5e-78 298.5 766 32.0
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 8.2e-77 292.7 222 66.7
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.1e-76 292.4 682 35.0
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 2.5e-73 281.2 197 71.1
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 4.2e-73 280.4 197 71.1
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 4.2e-73 280.4 197 71.1
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 2.2e-69 268.1 211 64.9
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.2e-59 235.7 236 55.5
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 6.5e-58 229.9 449 38.5
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 4.7e-56 223.8 467 37.9
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 2.7e-51 208.0 121 79.3
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 7.8e-51 206.5 131 80.9
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 3.3e-41 174.5 789 26.4
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.1e-40 171.8 242 46.7
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.4e-38 164.1 87 81.6
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.4e-38 164.1 87 81.6
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 7.5e-38 163.3 92 78.3
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.2e-30 139.4 142 52.8
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.5e-27 127.9 338 30.8
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-25 122.9 89 64.0
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 3.1e-23 114.8 75 80.0
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.0e-23 114.4 107 57.0
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 5.8e-22 110.5 74 71.6
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 2.9e-21 108.2 71 67.6
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.4e-20 104.0 107 54.2
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 3.9e-18 97.8 57 86.0
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.7e-16 90.9 85 57.6
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.7e-16 90.9 113 40.7
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 5.2e-15 87.4 59 64.4
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 2.0e-14 85.5 71 63.4
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 7.1e-12 77.0 77 53.2
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 1.2e-11 76.3 100 45.0
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 2.1e-11 75.5 52 76.9
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 6.0e-11 73.9 79 53.2
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 5.1e-10 70.9 52 73.1
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 1.5e-09 69.3 51 74.5
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 5.6e-09 67.4 65 61.5
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.3e-09 67.0 128 34.4
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.3e-08 66.2 247 29.6
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 2.1e-08 65.5 76 52.6
Oeu049880.1 Olea europaea HOM05D000526 ORTHO05D000956 4.0e-07 61.2 84 47.6


User provided reference genes

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