Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 1.5e-218 762.7 413 100.0
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 6.5e-142 508.1 417 71.2
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 5.5e-141 505.0 423 67.1
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 7.5e-138 494.6 428 63.6
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 7.5e-138 494.6 420 68.6
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 6.3e-137 491.5 417 65.0
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 6.3e-137 491.5 424 66.3
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 1.1e-136 490.7 429 63.2
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 1.4e-136 490.3 415 66.0
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 9.1e-136 487.6 411 65.5
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 2.0e-135 486.5 429 62.9
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 1.0e-134 484.2 355 72.1
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 2.9e-134 482.6 429 63.4
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 3.8e-134 482.3 416 64.9
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 5.0e-134 481.9 430 62.8
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 1.9e-133 479.9 413 63.7
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 7.2e-133 478.0 415 64.8
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 8.0e-132 474.6 417 65.0
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 1.0e-131 474.2 415 63.4
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 1.4e-131 473.8 411 63.5
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 1.8e-131 473.4 359 71.9
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 2.3e-131 473.0 354 70.3
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 1.2e-130 470.7 415 63.9
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 4.4e-130 468.8 416 64.4
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 9.8e-130 467.6 417 63.1
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 1.7e-129 466.8 415 65.3
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 3.7e-129 465.7 415 61.9
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 8.3e-129 464.5 411 61.8
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 1.1e-128 464.2 423 64.3
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 1.4e-128 463.8 353 71.4
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 2.4e-128 463.0 415 63.1
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 2.7e-127 459.5 357 68.1
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 1.0e-126 457.6 419 65.6
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 1.0e-126 457.6 417 62.4
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 1.3e-126 457.2 419 62.5
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 1.7e-126 456.8 424 61.8
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.9e-126 456.1 438 61.6
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 5.0e-126 455.3 420 63.1
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 5.0e-126 455.3 415 63.6
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 1.5e-125 453.8 355 68.7
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 4.3e-125 452.2 416 62.3
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 7.3e-125 451.4 415 65.1
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 9.5e-125 451.1 415 61.4
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 1.2e-124 450.7 436 63.3
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 2.8e-124 449.5 431 61.0
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 6.1e-124 448.4 415 61.4
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 6.1e-124 448.4 426 59.6
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 8.0e-124 448.0 428 61.4
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 3.0e-123 446.0 421 60.8
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 8.9e-123 444.5 438 60.7
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.0e-122 443.4 438 60.3
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 3.4e-122 442.6 427 59.0
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 3.4e-122 442.6 423 59.6
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 5.7e-122 441.8 422 60.0
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 7.5e-122 441.4 413 60.0
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 1.7e-121 440.3 444 56.8
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.7e-121 440.3 438 60.0
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 2.2e-121 439.9 417 60.2
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 3.7e-121 439.1 427 58.1
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 4.9e-121 438.7 433 58.7
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 1.1e-120 437.6 425 59.3
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 1.4e-120 437.2 433 58.2
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 2.4e-120 436.4 336 70.5
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 5.4e-120 435.3 359 67.7
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 2.0e-119 433.3 411 57.9
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 2.3e-118 429.9 419 59.4
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 3.9e-118 429.1 422 59.2
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.9e-118 429.1 435 58.6
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 6.6e-118 428.3 440 58.0
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 1.1e-117 427.6 414 59.7
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 1.1e-117 427.6 446 56.7
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 1.9e-117 426.8 532 50.4
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 2.5e-117 426.4 449 56.1
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 4.3e-117 425.6 435 58.4
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 5.6e-117 425.2 348 65.5
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 7.3e-117 424.9 416 57.2
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 7.3e-117 424.9 435 58.4
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 2.8e-116 422.9 438 55.7
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 3.6e-116 422.5 415 57.6
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 3.6e-116 422.5 418 58.9
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 6.2e-116 421.8 454 55.9
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 8.0e-116 421.4 411 57.2
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 8.0e-116 421.4 343 65.9
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 1.4e-115 420.6 443 56.0
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 4.0e-115 419.1 414 57.2
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 2.0e-114 416.8 418 59.8
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 1.7e-113 413.7 445 53.9
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 2.7e-111 406.4 414 56.0
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 1.4e-107 394.0 319 65.5
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 3.1e-107 392.9 436 53.2
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 6.8e-107 391.7 422 55.0
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 8.9e-107 391.3 419 54.2
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 8.9e-107 391.3 426 54.0
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 2.0e-106 390.2 436 53.2
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 3.7e-105 386.0 418 55.3
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 1.1e-104 384.4 418 55.5
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 1.5e-98 364.0 376 54.3
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 6.0e-95 352.1 331 62.2
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 8.6e-94 348.2 358 56.4
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 3.4e-90 336.3 327 57.5
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 5.8e-90 335.5 336 52.1
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 2.1e-87 327.0 270 66.7
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 1.0e-86 324.7 314 57.0
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 9.9e-82 308.1 328 57.3
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.1e-75 288.1 269 56.5
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 1.4e-75 287.7 379 44.1
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 6.4e-73 278.9 421 41.6
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 1.9e-69 267.3 334 47.6
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 7.1e-64 248.8 214 63.1
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 3.5e-63 246.5 305 48.2
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 4.1e-59 233.0 375 39.5
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 3.7e-44 183.3 127 71.7
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 1.4e-43 181.4 129 69.8
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 4.2e-40 169.9 207 48.8
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 3.5e-34 150.2 88 79.5
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 8.0e-23 112.5 310 27.7
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 1.1e-16 92.0 75 57.3
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 6.1e-15 86.3 148 45.3
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 1.3e-12 78.6 160 33.8
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 2.2e-12 77.8 66 57.6
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 1.8e-11 74.7 46 73.9
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 2.4e-11 74.3 56 58.9
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 4.5e-10 70.1 331 26.6
BolC3t13192H Brassica oleracea HOM05D006391 ORTHO05D007767 3.8e-09 67.0 180 30.6


User provided reference genes

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