Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 2.8e-43 179.5 198 100.0
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 3.4e-33 146.0 205 77.1
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 6.5e-16 88.6 83 77.1
PGR002G0007 Punica granatum HOM05D003899 ORTHO05D003655 1.4e-13 80.9 75 78.7
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 2.0e-12 77.0 46 76.1
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 2.0e-12 77.0 46 76.1
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 7.4e-12 75.1 46 73.9
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 7.4e-12 75.1 46 73.9
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 2.4e-10 70.1 47 70.2
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 4.1e-10 69.3 46 67.4
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 5.3e-10 68.9 45 71.1
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 6.9e-10 68.6 46 63.0
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 2.0e-09 67.0 46 67.4
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 4.5e-09 65.9 47 61.7
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 7.7e-09 65.1 45 64.4
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 1.0e-08 64.7 38 76.3
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.0e-08 64.7 45 64.4
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 1.3e-08 64.3 47 59.6
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 1.3e-08 64.3 47 59.6
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 1.7e-08 63.9 46 65.2
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 1.7e-08 63.9 47 59.6
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 2.2e-08 63.5 46 63.0
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.2e-08 63.5 45 60.0
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 2.9e-08 63.2 46 56.5
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.9e-08 63.2 42 64.3
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 2.9e-08 63.2 46 58.7
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 6.5e-08 62.0 45 57.8
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 6.5e-08 62.0 78 41.0
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.1e-07 61.2 45 55.6
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.1e-07 61.2 45 55.6
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 1.4e-07 60.8 46 56.5
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.5e-07 60.1 46 56.5
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 2.5e-07 60.1 46 56.5
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 4.2e-07 59.3 46 56.5
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 4.2e-07 59.3 43 58.1
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 5.5e-07 58.9 45 53.3
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 5.5e-07 58.9 46 56.5
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 5.5e-07 58.9 46 56.5
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 5.5e-07 58.9 44 61.4
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 7.2e-07 58.5 43 62.8
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 9.4e-07 58.2 46 52.2
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 9.4e-07 58.2 42 61.9
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 1.2e-06 57.8 45 53.3
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 1.2e-06 57.8 45 53.3
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 1.2e-06 57.8 45 53.3
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 1.2e-06 57.8 45 53.3
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 1.2e-06 57.8 45 53.3
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 1.2e-06 57.8 45 51.1
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 1.2e-06 57.8 38 65.8
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.2e-06 57.8 46 56.5
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 1.2e-06 57.8 42 61.9
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 1.2e-06 57.8 46 56.5
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.2e-06 57.8 38 68.4
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 1.6e-06 57.4 78 35.9
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 2.1e-06 57.0 79 40.5
Atru.chr13.1710 Acer truncatum HOM05D003899 ORTHO05D003655 2.7e-06 56.6 37 62.2
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 2.7e-06 56.6 46 56.5
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 3.6e-06 56.2 81 35.8
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 3.6e-06 56.2 44 59.1
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 3.6e-06 56.2 42 57.1
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 3.6e-06 56.2 45 53.3
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 4.7e-06 55.8 38 65.8
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 4.7e-06 55.8 39 64.1
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 4.7e-06 55.8 36 66.7
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 6.1e-06 55.5 36 63.9
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 6.1e-06 55.5 46 56.5
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 7.9e-06 55.1 44 59.1
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 7.9e-06 55.1 39 59.0
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 7.9e-06 55.1 46 50.0


User provided reference genes

Program Settings