Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 0.0e+00 1796.9 917 100.0
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 0.0e+00 1457.6 914 82.9
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 3.1e-285 985.3 908 58.6
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 1.9e-282 976.1 931 58.4
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 7.1e-282 974.2 931 58.2
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 1.6e-278 963.0 876 59.2
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 6.3e-278 961.1 928 56.9
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 1.8e-277 959.5 919 57.6
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 3.1e-277 958.7 919 56.9
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 1.3e-275 953.4 921 56.5
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 1.1e-274 950.3 936 55.9
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 1.1e-274 950.3 922 55.4
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 3.2e-274 948.7 916 55.6
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 2.7e-273 945.7 930 56.0
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 3.6e-273 945.3 930 55.1
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 1.0e-272 943.7 931 55.4
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 8.7e-272 940.6 932 56.3
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 3.3e-271 938.7 929 54.6
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 7.4e-271 937.6 1006 53.5
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 8.2e-270 934.1 930 55.9
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 1.4e-269 933.3 929 55.7
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 4.1e-269 931.8 918 54.8
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.2e-268 930.2 943 54.8
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 1.2e-268 930.2 940 55.2
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 5.9e-268 927.9 920 55.3
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 2.9e-267 925.6 929 53.9
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 8.5e-267 924.1 919 54.2
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 3.2e-266 922.2 932 54.6
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 5.5e-266 921.4 920 54.6
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 2.1e-265 919.5 927 54.5
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 2.1e-265 919.5 905 55.4
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.7e-265 919.1 920 54.5
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 6.1e-265 917.9 924 54.0
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 3.9e-264 915.2 921 54.0
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 5.1e-264 914.8 943 54.4
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 1.5e-263 913.3 925 54.2
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 1.7e-262 909.8 936 54.0
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 8.2e-262 907.5 938 54.1
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 5.3e-261 904.8 849 57.5
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 7.7e-260 901.0 956 52.8
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 3.8e-259 898.7 921 54.2
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 3.2e-258 895.6 920 53.9
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 4.2e-258 895.2 922 54.0
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 5.5e-258 894.8 921 52.7
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 9.4e-258 894.0 974 51.2
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 1.8e-256 889.8 918 54.9
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 1.8e-256 889.8 923 54.1
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 3.9e-256 888.6 930 53.7
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 3.9e-256 888.6 923 54.3
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 3.3e-255 885.6 905 52.8
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 2.0e-252 876.3 914 53.3
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 1.3e-251 873.6 901 53.1
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 1.5e-250 870.2 873 54.6
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 3.6e-249 865.5 884 54.2
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 8.0e-249 864.4 917 52.1
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.0e-248 864.0 1092 47.2
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 2.8e-246 855.9 926 52.3
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 1.8e-245 853.2 950 50.4
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 4.5e-244 848.6 1087 48.1
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 3.6e-241 839.0 930 51.0
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 3.0e-240 835.9 994 48.6
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 4.4e-239 832.0 933 50.2
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 2.8e-238 829.3 932 50.1
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 3.7e-238 828.9 931 51.0
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 6.3e-238 828.2 931 50.7
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 8.3e-238 827.8 930 50.1
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 8.3e-238 827.8 933 49.9
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 7.0e-237 824.7 864 53.4
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 2.0e-236 823.2 929 50.6
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 4.5e-236 822.0 929 50.2
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 5.9e-236 821.6 925 50.2
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 7.7e-236 821.2 928 50.3
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.0e-235 820.8 917 51.8
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 2.8e-233 812.8 929 50.2
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 8.8e-232 807.7 915 50.6
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 4.4e-231 805.4 775 57.2
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 5.7e-231 805.1 1025 47.5
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 2.8e-230 802.7 923 49.4
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 2.9e-227 792.7 948 48.3
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 9.5e-226 787.7 685 61.6
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 5.7e-223 778.5 871 51.2
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 7.8e-220 768.1 928 48.0
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 2.5e-218 763.1 947 47.4
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 2.8e-217 759.6 921 48.4
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 2.6e-215 753.1 954 46.3
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 4.4e-215 752.3 944 49.6
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 6.0e-212 741.9 913 48.0
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 9.5e-210 734.6 1142 40.6
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 8.9e-208 728.0 762 53.0
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 3.4e-207 726.1 643 61.0
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 2.3e-203 713.4 652 59.2
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 7.3e-186 655.2 731 50.6
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 7.1e-181 638.6 790 47.2
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 9.3e-181 638.3 924 43.3
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.6e-177 627.5 537 63.5
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 3.3e-170 603.2 555 60.0
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 1.8e-163 580.9 644 49.8
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 3.3e-162 576.6 560 56.6
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.0e-150 538.5 912 37.9
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 5.7e-146 522.7 895 38.9
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 5.7e-146 522.7 612 49.8
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 6.3e-145 519.2 878 38.7
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.8e-144 517.7 433 64.2
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 6.7e-139 499.2 918 36.3
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 5.0e-134 483.0 446 59.2
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.5e-133 481.5 472 57.6
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 7.2e-133 479.2 578 46.7
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 8.0e-124 449.1 663 42.4
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 4.1e-120 436.8 611 44.2
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 3.1e-112 410.6 493 46.7
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 3.1e-107 394.0 575 41.7
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 2.0e-106 391.3 297 68.7
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 1.2e-92 345.5 404 46.3
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.6e-84 318.5 277 59.6
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 6.2e-84 316.6 241 69.3
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 9.9e-82 309.3 226 71.7
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 3.8e-81 307.4 623 36.4
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 2.1e-68 265.0 286 54.9
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 1.8e-67 261.9 337 42.7
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.5e-61 242.3 621 29.5
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 2.8e-60 238.0 216 60.6
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 1.0e-49 203.0 152 66.4
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.3e-41 176.0 137 65.0
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 3.6e-39 167.9 155 52.9
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.1e-32 146.4 101 69.3
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.5e-26 125.9 121 53.7
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.5e-24 119.4 100 65.0
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.1e-23 115.5 166 40.4
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 2.1e-23 115.5 109 64.2
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 1.1e-21 109.8 228 32.9
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 2.0e-21 109.0 128 46.1
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 5.7e-21 107.5 82 56.1
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 2.2e-20 105.5 260 31.5
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 3.0e-14 85.1 150 42.0
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 4.0e-14 84.7 99 51.5
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 6.3e-12 77.4 103 50.5
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 5.3e-11 74.3 118 39.8
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 5.3e-11 74.3 96 46.9
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 2.9e-09 68.6 83 48.2
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 6.5e-09 67.4 72 48.6
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 8.5e-09 67.0 79 46.8
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 5.5e-08 64.3 954 20.5
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 5.5e-08 64.3 129 37.2
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 8.8e-06 57.0 76 42.1


User provided reference genes

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