Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.0e-174 615.1 332 100.0
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 4.8e-135 485.0 316 84.5
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 1.9e-123 446.4 309 79.9
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 5.6e-120 434.9 314 76.1
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 3.7e-119 432.2 308 75.0
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 1.5e-117 426.8 312 73.1
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 3.4e-117 425.6 320 72.8
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 4.5e-117 425.2 302 74.8
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 7.6e-117 424.5 311 73.6
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 7.6e-117 424.5 302 74.8
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.0e-116 424.1 308 73.7
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.2e-116 422.9 311 73.3
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 2.2e-116 422.9 308 73.4
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 6.5e-116 421.4 317 72.9
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 1.1e-115 420.6 313 72.8
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.1e-115 420.6 313 73.8
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.4e-115 420.2 308 73.4
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 1.9e-115 419.9 302 74.5
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 2.5e-115 419.5 308 73.1
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 5.5e-115 418.3 308 73.7
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 9.3e-115 417.5 311 72.3
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 1.2e-114 417.2 311 71.1
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 1.2e-114 417.2 314 71.7
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.2e-114 417.2 310 72.3
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.6e-114 416.8 310 72.3
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.1e-114 416.4 331 70.7
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 2.1e-114 416.4 315 72.4
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 4.6e-114 415.2 329 69.9
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 6.0e-114 414.8 304 72.7
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 6.0e-114 414.8 304 72.7
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 7.9e-114 414.5 306 72.5
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 1.0e-113 414.1 314 72.0
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.3e-113 413.7 317 71.0
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 1.8e-113 413.3 329 70.2
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 8.7e-113 411.0 329 69.9
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.1e-112 410.6 299 72.6
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 1.9e-112 409.8 309 72.5
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.3e-111 407.1 305 71.5
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.6e-111 406.8 303 72.9
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 2.2e-111 406.4 303 72.3
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 2.8e-111 406.0 309 70.9
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 3.7e-111 405.6 307 70.4
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.1e-110 404.1 310 71.0
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.1e-110 404.1 310 71.0
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 1.1e-110 404.1 302 71.9
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 6.9e-110 401.4 319 70.8
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 9.0e-110 401.0 302 70.5
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.5e-109 400.2 315 68.6
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 4.5e-109 398.7 308 70.1
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 6.5e-108 394.8 315 71.4
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.9e-107 393.3 312 71.8
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 2.1e-106 389.8 308 68.2
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 4.6e-106 388.7 310 68.7
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 7.9e-106 387.9 301 69.4
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 1.0e-105 387.5 303 70.0
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 3.9e-105 385.6 303 68.0
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 4.3e-104 382.1 302 69.5
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 1.7e-103 380.2 307 68.7
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.4e-102 377.1 304 66.8
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 2.4e-102 376.3 311 67.5
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 2.4e-102 376.3 314 66.2
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 3.1e-102 375.9 301 67.4
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 6.9e-102 374.8 303 67.3
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 6.9e-102 374.8 320 66.9
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 9.1e-102 374.4 307 66.4
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.2e-101 374.0 300 68.0
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.0e-101 373.2 308 66.6
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.0e-100 370.9 308 66.6
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.9e-100 369.4 292 69.5
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 8.5e-100 367.9 317 65.0
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.1e-99 367.5 315 65.4
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.9e-99 366.7 309 65.4
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.9e-99 366.7 329 65.0
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 2.5e-99 366.3 302 66.2
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.2e-99 365.9 298 67.8
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 7.2e-99 364.8 303 66.0
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.2e-98 364.0 315 65.1
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 2.1e-98 363.2 305 67.5
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 2.7e-98 362.8 309 68.6
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 3.6e-98 362.5 314 64.6
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 4.7e-98 362.1 301 67.4
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 6.1e-98 361.7 308 64.3
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 1.0e-97 360.9 312 63.1
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.4e-97 360.5 329 60.5
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 1.4e-97 360.5 301 65.1
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 2.3e-97 359.8 299 66.2
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 2.3e-97 359.8 293 67.2
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 8.8e-97 357.8 312 62.5
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.1e-96 357.5 306 63.4
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.1e-96 357.5 307 63.5
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 2.0e-96 356.7 318 63.2
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 3.3e-96 355.9 291 68.4
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 9.7e-96 354.4 324 61.1
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 2.2e-95 353.2 307 65.1
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 3.7e-95 352.4 309 65.0
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 6.3e-95 351.7 307 62.9
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 6.3e-95 351.7 307 62.9
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 1.1e-94 350.9 309 62.5
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 1.1e-94 350.9 314 61.5
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 5.3e-94 348.6 308 62.7
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 5.3e-94 348.6 301 64.1
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 6.9e-94 348.2 309 62.5
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.2e-93 347.4 306 62.4
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 2.6e-93 346.3 307 62.5
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 3.4e-93 345.9 324 61.4
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.3e-92 344.0 309 61.8
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 1.3e-92 344.0 318 60.7
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 2.9e-92 342.8 305 62.0
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 2.9e-92 342.8 313 62.9
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 3.2e-91 339.3 312 61.2
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.4e-89 334.0 307 61.9
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 3.9e-89 332.4 309 61.8
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 5.2e-89 332.0 305 61.3
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 1.5e-88 330.5 242 72.3
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 5.7e-88 328.6 312 61.2
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.8e-86 323.6 247 70.4
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 5.0e-76 288.9 318 54.4
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 3.6e-74 282.7 304 54.6
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 2.4e-70 270.0 214 69.2
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 7.2e-67 258.5 301 52.8
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 7.2e-67 258.5 301 53.2
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 1.7e-60 237.3 236 58.1
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 9.5e-59 231.5 310 47.7
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 5.2e-57 225.7 293 46.4
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.3e-55 221.1 213 57.7
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 7.0e-54 215.3 294 48.3
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 9.2e-54 214.9 213 59.2
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 7.3e-51 205.3 261 51.7
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 9.5e-51 204.9 201 57.7
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 1.1e-46 191.4 319 40.4
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.4e-46 191.0 127 78.0
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.4e-46 191.0 320 41.9
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.6e-45 187.6 128 74.2
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 1.1e-43 181.4 284 41.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.6e-40 170.2 321 38.3
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 2.6e-32 143.7 307 35.8
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 2.2e-31 140.6 94 75.5
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.4e-30 137.9 143 57.3
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 8.7e-28 128.6 100 70.0
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 2.1e-26 124.0 216 40.7
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 6.2e-26 122.5 204 38.2
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 5.8e-24 115.9 128 54.7
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 8.7e-20 102.1 75 72.0
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.9e-19 100.9 172 44.8
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 2.8e-18 97.1 71 67.6
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 6.9e-17 92.4 65 76.9
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 6.4e-15 85.9 177 35.6
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 6.4e-15 85.9 177 35.6
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 6.4e-15 85.9 177 35.6
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 4.2e-14 83.2 90 57.8
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 6.0e-13 79.3 48 81.2
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 7.9e-13 79.0 78 55.1
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 8.7e-12 75.5 94 46.8
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 5.6e-11 72.8 72 54.2
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.4e-08 63.5 59 62.7
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 2.5e-06 57.4 40 67.5
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 4.2e-06 56.6 104 35.6


User provided reference genes

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