Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 3.7e-263 911.0 457 100.0
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 4.2e-182 641.7 457 70.7
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 1.5e-91 340.9 459 41.0
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 2.6e-91 340.1 453 40.4
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 7.3e-86 322.0 463 39.5
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 1.8e-84 317.4 458 38.9
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 4.0e-84 316.2 452 38.9
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 1.5e-83 314.3 453 38.4
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 4.5e-83 312.8 460 37.8
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 1.3e-82 311.2 453 36.9
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 1.7e-82 310.8 452 37.6
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 2.4e-81 307.0 458 38.2
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 7.1e-81 305.4 454 37.9
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 9.3e-81 305.1 452 38.9
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 2.1e-80 303.9 454 37.7
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 2.1e-80 303.9 452 36.1
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 3.5e-80 303.1 412 37.6
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.6e-80 302.8 454 36.6
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 4.6e-80 302.8 453 37.5
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 1.0e-79 301.6 454 39.2
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 1.3e-79 301.2 454 36.1
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.9e-79 299.7 454 37.0
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.9e-79 299.7 454 35.9
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 8.7e-79 298.5 454 35.9
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 1.5e-78 297.7 456 37.1
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 5.6e-78 295.8 454 36.3
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 5.6e-78 295.8 414 38.2
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.6e-77 294.3 455 38.0
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 2.8e-77 293.5 463 37.1
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 6.2e-77 292.4 463 36.1
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 1.4e-76 291.2 460 36.1
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 4.0e-76 289.7 454 35.9
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 5.3e-76 289.3 452 35.8
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 5.3e-76 289.3 454 36.1
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 1.2e-75 288.1 454 36.3
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 2.0e-75 287.3 468 36.1
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 2.6e-75 287.0 455 36.0
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 3.4e-75 286.6 457 35.2
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 4.5e-75 286.2 452 37.2
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 7.6e-75 285.4 454 35.9
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 4.9e-74 282.7 456 34.9
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 6.4e-74 282.3 454 36.1
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 1.4e-73 281.2 453 36.6
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 1.9e-73 280.8 463 36.1
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 5.5e-73 279.3 441 36.3
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 1.6e-72 277.7 453 35.3
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 1.6e-72 277.7 441 35.8
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 2.1e-72 277.3 456 34.2
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 1.8e-71 274.2 467 34.3
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 3.0e-71 273.5 454 35.7
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 1.1e-70 271.6 454 35.9
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.9e-70 270.8 464 34.5
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 5.6e-70 269.2 464 34.9
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 1.6e-69 267.7 413 36.1
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 2.8e-69 266.9 454 34.8
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 4.8e-69 266.2 453 34.0
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 8.2e-69 265.4 453 34.0
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 4.0e-68 263.1 457 31.9
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 9.0e-68 261.9 452 33.0
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 1.2e-67 261.5 453 34.4
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 7.6e-67 258.8 458 34.1
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 7.6e-67 258.8 455 34.3
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 1.0e-66 258.5 461 34.1
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 2.2e-66 257.3 454 34.4
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 2.2e-66 257.3 454 34.6
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 2.9e-66 256.9 456 32.5
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 2.9e-66 256.9 456 32.5
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 3.8e-66 256.5 455 34.1
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 1.1e-65 255.0 455 34.7
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 1.4e-65 254.6 454 34.1
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 3.2e-65 253.4 406 33.5
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 3.2e-65 253.4 450 34.2
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 7.1e-65 252.3 441 34.2
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 8.7e-63 245.4 463 32.8
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.1e-62 245.0 455 33.2
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 7.4e-62 242.3 455 33.0
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 6.3e-61 239.2 455 31.9
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 9.0e-60 235.3 415 34.0
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 1.5e-59 234.6 418 34.2
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 2.0e-59 234.2 455 32.5
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 2.0e-59 234.2 415 32.0
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 7.6e-59 232.3 455 30.1
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 1.7e-58 231.1 458 32.3
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 2.9e-58 230.3 454 31.5
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 5.0e-58 229.6 458 31.4
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 1.9e-57 227.6 455 31.4
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 2.5e-57 227.3 455 31.9
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 3.2e-57 226.9 455 31.4
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 1.2e-56 224.9 408 32.8
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 3.0e-55 220.3 418 33.3
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 5.7e-54 216.1 459 29.8
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 2.0e-51 207.6 456 30.0
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 7.2e-49 199.1 379 31.9
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 2.7e-48 197.2 466 30.0
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.1e-41 175.3 283 35.7
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 5.5e-41 172.9 417 29.3
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 5.5e-41 172.9 284 33.8
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.6e-35 154.8 199 44.2
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 3.6e-32 143.7 265 30.9
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 1.0e-31 142.1 392 28.8
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 5.7e-30 136.3 424 26.7
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 1.7e-26 124.8 387 26.6
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 3.6e-24 117.1 129 47.3
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.6e-19 101.7 155 31.0
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 1.6e-16 91.7 114 42.1
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 7.5e-14 82.8 129 34.1


User provided reference genes

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