Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0561500 Oryza sativa ssp. japonica HOM05D005742 ORTHO05D001888 1.6e-116 422.9 232 100.0
Zm00001eb028480 Zea mays HOM05D005742 ORTHO05D001888 8.1e-49 198.0 209 59.3
Zm00001eb136950 Zea mays HOM05D005742 ORTHO05D001888 4.9e-46 188.7 208 58.2
Os11g0677400 Oryza sativa ssp. japonica HOM05D005742 ORTHO05D001888 3.2e-21 106.3 165 44.8
ATR0796G165 Amborella trichopoda HOM05D005742 ORTHO05D001888 1.9e-13 80.5 156 35.9
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 5.1e-11 72.4 147 36.1
HPP92_027565 Vanilla planifolia HOM05D005742 ORTHO05D001888 5.1e-11 72.4 148 35.1
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 6.7e-11 72.0 147 38.1
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 6.7e-11 72.0 170 38.2
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 8.8e-11 71.6 147 36.7
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 1.1e-10 71.2 147 36.7
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 1.1e-10 71.2 147 36.7
TWI09G1381 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 2.0e-10 70.5 258 29.8
HPP92_017245 Vanilla planifolia HOM05D005742 ORTHO05D001888 3.3e-10 69.7 148 34.5
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 4.4e-10 69.3 147 36.1
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 4.4e-10 69.3 147 36.1
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 5.7e-10 68.9 251 33.5
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 5.7e-10 68.9 149 38.3
Cc03_g00920 Coffea canephora HOM05D005742 ORTHO05D001888 1.3e-09 67.8 147 34.0
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 1.7e-09 67.4 147 37.4
CAN.G244.7 Capsicum annuum HOM05D005742 ORTHO05D001888 2.2e-09 67.0 148 32.4
PGSC0003DMG400021845 Solanum tuberosum HOM05D005742 ORTHO05D001888 8.2e-09 65.1 153 31.4
Manes.01G228700 Manihot esculenta HOM05D008182 ORTHO05D001888 1.4e-08 64.3 185 34.1
Nitab4.5_0002218g0040 Nicotiana tabacum HOM05D005742 ORTHO05D001888 1.4e-08 64.3 146 33.6
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 1.8e-08 63.9 170 32.9
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 4.1e-08 62.8 147 36.7
TWI53G1179 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 4.1e-08 62.8 198 32.8
Potri.014G119200 Populus trichocarpa HOM05D008182 ORTHO05D001888 5.3e-08 62.4 228 32.5
Nitab4.5_0000169g0180 Nicotiana tabacum HOM05D005742 ORTHO05D001888 7.0e-08 62.0 146 32.9
Solyc01g059940.2 Solanum lycopersicum HOM05D005742 ORTHO05D001888 2.0e-07 60.5 181 31.5
MBI18_g17308_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 2.6e-07 60.1 143 32.9
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 3.4e-07 59.7 147 31.3
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 4.5e-07 59.3 237 32.9
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 4.5e-07 59.3 208 34.1
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 4.5e-07 59.3 146 33.6
Manes.05G004700 Manihot esculenta HOM05D008182 ORTHO05D001888 5.9e-07 58.9 169 30.2
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 7.7e-07 58.5 149 32.2
CiPaw.02G075500 Carya illinoinensis HOM05D005742 ORTHO05D001888 1.0e-06 58.2 224 29.9
AL4G46900 Arabidopsis lyrata HOM05D026554 ORTHO05D001888 1.3e-06 57.8 149 31.5
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 1.3e-06 57.8 220 33.6
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 1.7e-06 57.4 182 35.2
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 1.7e-06 57.4 206 29.1
Nn3g21713 Nelumbo nucifera HOM05D005742 ORTHO05D001888 1.7e-06 57.4 149 29.5
FvH4_4g19570 Fragaria vesca HOM05D005742 ORTHO05D001888 2.2e-06 57.0 173 30.1
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 2.2e-06 57.0 191 30.9
FAN12G0951 Fragaria x ananassa HOM05D001258 ORTHO05D000158 2.9e-06 56.6 173 30.1
Peaxi162Scf00228g00024 Petunia axillaris HOM05D005742 ORTHO05D001888 2.9e-06 56.6 146 32.9
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 5.0e-06 55.8 187 33.7
Gorai.005G066500 Gossypium raimondii HOM05D005742 ORTHO05D001888 5.0e-06 55.8 149 31.5


User provided reference genes

Program Settings