Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0545400 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 1.4e-223 779.2 393 100.0
Os07g0228400 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 6.7e-19 99.4 300 32.0
Os07g0118900 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 2.1e-17 94.4 311 31.5
Os07g0228900 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 2.8e-17 94.0 205 37.1
Os07g0130000 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 9.0e-16 89.0 265 32.5
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 1.1e-13 82.0 264 31.8
Zm00001eb162720 Zea mays HOM05D011003 ORTHO05D012370 1.4e-13 81.6 267 29.6
Os07g0113600 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 2.4e-13 80.9 278 30.9
Os07g0118800 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 2.4e-13 80.9 277 30.3
Zm00001eb116530 Zea mays HOM05D011003 ORTHO05D012370 4.2e-13 80.1 271 32.8
Os07g0229200 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 1.6e-12 78.2 237 34.2
Os07g0548100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 8.7e-11 72.4 275 28.4
BraA06t25743Z Brassica rapa HOM05D000051 ORTHO05D000015 4.0e-08 63.5 254 29.5
AUR62020682 Chenopodium quinoa HOM05D000051 ORTHO05D000015 5.3e-08 63.2 248 26.6
CSS0005039 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000843 1.5e-07 61.6 270 25.2
Zm00001eb105050 Zea mays HOM05D011003 ORTHO05D012370 1.5e-07 61.6 130 43.8
A06p28020 Brassica napus HOM05D000051 ORTHO05D000015 3.4e-07 60.5 258 28.3
Lsat_1_v5_gn_3_22861 Lactuca sativa HOM05D001243 ORTHO05D000843 3.4e-07 60.5 251 26.3
Carub.0005s1915 Capsella rubella HOM05D000051 ORTHO05D000015 5.8e-07 59.7 264 27.7
Aa31LG7G1370 Aethionema arabicum HOM05D000051 ORTHO05D000015 1.0e-06 58.9 249 26.5
BcaC02g07457 Brassica carinata HOM05D000051 ORTHO05D000015 1.0e-06 58.9 246 28.0
C04p66760 Brassica napus HOM05D000051 ORTHO05D000015 1.0e-06 58.9 246 28.0
BraA03t10659Z Brassica rapa HOM05D000051 ORTHO05D000038 1.0e-06 58.9 244 26.2
SGA_v2.0_scaffold70G23559 Striga asiatica HOM05D000051 ORTHO05D000015 1.0e-06 58.9 239 28.9
BraA03t10878Z Brassica rapa HOM05D000051 ORTHO05D000015 1.3e-06 58.5 253 25.3
Thhalv10009690m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 1.3e-06 58.5 249 27.7
BraA09t35952Z Brassica rapa HOM05D000051 ORTHO05D000015 2.2e-06 57.8 243 26.7
C04p66770 Brassica napus HOM05D000051 ORTHO05D000015 2.9e-06 57.4 248 28.6
Migut.M00823 Erythranthe guttata HOM05D000051 ORTHO05D000015 2.9e-06 57.4 223 28.3
SGA_v2.0_scaffold34G13930 Striga asiatica HOM05D000051 ORTHO05D000015 2.9e-06 57.4 46 60.9
BcaB04g19411 Brassica carinata HOM05D000051 ORTHO05D000015 3.8e-06 57.0 273 26.0
C09p03320 Brassica napus HOM05D000051 ORTHO05D000015 3.8e-06 57.0 242 27.3
BolC4t28178H Brassica oleracea HOM05D000051 ORTHO05D000015 3.8e-06 57.0 153 31.4
BolC9t57626H Brassica oleracea HOM05D000051 ORTHO05D000015 3.8e-06 57.0 236 25.4
A04p32900 Brassica napus HOM05D000051 ORTHO05D000015 4.9e-06 56.6 236 27.5
COL.COLO4_27089 Corchorus olitorius HOM05D000576 ORTHO05D000368 4.9e-06 56.6 70 48.6
Lj1g0028071 Lotus japonicus HOM05D001243 ORTHO05D000843 4.9e-06 56.6 171 31.6
CARHR150860 Cardamine hirsuta HOM05D000051 ORTHO05D000015 6.5e-06 56.2 234 28.6
Migut.N01904 Erythranthe guttata HOM05D000051 ORTHO05D000015 6.5e-06 56.2 245 28.2
FAN13G3121 Fragaria x ananassa HOM05D003102 ORTHO05D000015 8.4e-06 55.8 238 30.3


User provided reference genes

Program Settings