Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0517100 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 9.1e-263 909.8 502 100.0
Os12g0516900 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.7e-123 447.2 394 59.4
Os12g0517000 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 8.5e-120 434.9 473 61.9
Os04g0370600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 2.8e-107 393.3 475 54.7
Nn8g39702 Nelumbo nucifera HOM05D001993 ORTHO05D009037 1.9e-82 310.8 402 44.0
Os04g0370500 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 2.4e-82 310.5 404 48.0
Thecc.01G153800 Theobroma cacao HOM05D001993 ORTHO05D009037 8.6e-80 302.0 478 42.9
Potri.017G053400 Populus trichocarpa HOM05D001993 ORTHO05D009037 1.9e-79 300.8 407 42.5
SEGI_33239 Sequoiadendron giganteum HOM05D001993 ORTHO05D009037 1.9e-79 300.8 403 42.7
Gorai.004G256300 Gossypium raimondii HOM05D001993 ORTHO05D009037 2.5e-79 300.4 403 42.2
Gohir.D08G240900 Gossypium hirsutum HOM05D001993 ORTHO05D009037 1.2e-78 298.1 403 41.9
TPR.G19157 Trifolium pratense HOM05D001993 ORTHO05D009037 1.2e-78 298.1 407 41.8
Lj3g0005746 Lotus japonicus HOM05D001993 ORTHO05D009037 2.1e-78 297.4 403 42.2
COL.COLO4_33613 Corchorus olitorius HOM05D001993 ORTHO05D009037 4.7e-78 296.2 407 41.3
Glyma.15G004900 Glycine max HOM05D001993 ORTHO05D009037 4.7e-78 296.2 407 41.0
Haze_16628 Corylus avellana HOM05D001993 ORTHO05D009037 1.4e-77 294.7 404 42.3
Lalb_Chr14g0373981 Lupinus albus HOM05D001993 ORTHO05D009037 1.4e-77 294.7 406 41.1
CSS0028818 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D009037 2.4e-77 293.9 403 43.2
Duzib147G1049 Durio zibethinus HOM05D001993 ORTHO05D009037 4.0e-77 293.1 474 43.0
Haze_16631 Corylus avellana HOM05D001993 ORTHO05D009037 5.2e-77 292.7 403 41.9
Cpa.g.sc10.126 Carica papaya HOM05D001993 ORTHO05D009037 8.9e-77 292.0 405 41.7
CiPaw.01G251700 Carya illinoinensis HOM05D001993 ORTHO05D009037 8.9e-77 292.0 404 42.8
TAR625G0584 Trochodendron aralioides HOM05D001993 ORTHO05D009037 8.9e-77 292.0 406 42.4
Glyma.13G368900 Glycine max HOM05D001993 ORTHO05D009037 1.2e-76 291.6 403 41.4
Manes.11G063100 Manihot esculenta HOM05D001993 ORTHO05D009037 1.5e-76 291.2 403 42.4
RcHm_v2.0_Chr2g0133701 Rosa chinensis HOM05D001993 ORTHO05D009037 1.5e-76 291.2 407 41.0
Medtr2g104760 Medicago truncatula HOM05D001993 ORTHO05D009037 2.0e-76 290.8 403 41.7
Gohir.A08G221654 Gossypium hirsutum HOM05D001993 ORTHO05D009037 3.4e-76 290.0 403 40.9
Phvul.005G181200 Phaseolus vulgaris HOM05D001993 ORTHO05D009037 3.4e-76 290.0 407 40.3
TPR.G8903 Trifolium pratense HOM05D001993 ORTHO05D009037 4.4e-76 289.7 408 40.9
MSTRG.22779 Avicennia marina HOM05D001993 ORTHO05D009037 9.9e-76 288.5 408 42.2
Ciclev10025548m.g Citrus clementina HOM05D001993 ORTHO05D009037 1.7e-75 287.7 406 42.4
Peaxi162Scf00108g00131 Petunia axillaris HOM05D001993 ORTHO05D009037 1.7e-75 287.7 408 41.4
Atru.chr13.159 Acer truncatum HOM05D001993 ORTHO05D009037 2.2e-75 287.3 407 41.0
VMungo1080G1544 Vigna mungo HOM05D001993 ORTHO05D009037 2.9e-75 287.0 407 39.8
Ca_01029_v3 Cicer arietinum L. HOM05D001993 ORTHO05D009037 6.4e-75 285.8 399 41.1
FvH4_6g29021 Fragaria vesca HOM05D001993 ORTHO05D009037 8.4e-75 285.4 407 40.0
MD17G1219000 Malus domestica HOM05D001993 ORTHO05D009037 8.4e-75 285.4 408 41.4
ATR0767G064 Amborella trichopoda HOM05D001993 ORTHO05D009037 1.1e-74 285.0 403 40.4
Cfa001914 Carpinus fangiana HOM05D001993 ORTHO05D009037 1.1e-74 285.0 397 41.6
THA.LOC104808190 Tarenaya hassleriana HOM05D001993 ORTHO05D009037 1.4e-74 284.6 405 41.7
Nn2g12227 Nelumbo nucifera HOM05D001993 ORTHO05D009037 1.9e-74 284.3 403 41.4
vmacro16868 Vaccinium macrocarpon HOM05D001993 ORTHO05D009037 1.9e-74 284.3 401 41.6
Prupe.3G094500 Prunus persica HOM05D001993 ORTHO05D009037 2.4e-74 283.9 407 40.3
Rhsim12G0188800 Rhododendron simsii HOM05D001993 ORTHO05D009037 4.2e-74 283.1 407 41.0
Aqoxy7G03544 Aquilegia oxysepala HOM05D001993 ORTHO05D009037 7.1e-74 282.3 474 47.0
FAN09G0213 Fragaria x ananassa HOM05D001993 ORTHO05D009037 7.1e-74 282.3 407 39.8
Nitab4.5_0000233g0190 Nicotiana tabacum HOM05D001993 ORTHO05D009037 7.1e-74 282.3 407 41.0
Psat5g303960 Pisum sativum HOM05D001993 ORTHO05D009037 7.1e-74 282.3 403 40.7
Sed0024162 Sechium edule HOM05D001993 ORTHO05D009037 7.1e-74 282.3 399 40.1
Migut.I00727 Erythranthe guttata HOM05D001993 ORTHO05D009037 9.2e-74 282.0 408 40.9
Oeu010088.1 Olea europaea HOM05D001993 ORTHO05D009037 1.6e-73 281.2 406 40.6
PGSC0003DMG400024263 Solanum tuberosum HOM05D001993 ORTHO05D009037 2.1e-73 280.8 407 41.5
FAN05G0323 Fragaria x ananassa HOM05D001993 ORTHO05D009037 4.6e-73 279.6 407 39.3
Lj5C77T4 Lonicera japonica HOM05D001993 ORTHO05D009037 4.6e-73 279.6 401 41.6
CsaV3_7G032050 Cucumis sativus L. HOM05D001993 ORTHO05D009037 1.0e-72 278.5 401 39.4
TWI12G1056 Tripterygium wilfordii HOM05D001993 ORTHO05D009037 1.0e-72 278.5 401 41.9
Sabra17G0045400 Salix brachista HOM05D001993 ORTHO05D009037 1.3e-72 278.1 407 39.8
Ah.01g006660 Amaranthus hybridus HOM05D001993 ORTHO05D009037 2.3e-72 277.3 410 39.3
unitig_0.g1110 Utricularia gibba HOM05D001993 ORTHO05D009037 3.9e-72 276.6 403 41.2
CAN.G697.13 Capsicum annuum HOM05D001993 ORTHO05D009037 5.1e-72 276.2 408 40.7
Eucgr.J03091 Eucalyptus grandis HOM05D001993 ORTHO05D009037 5.1e-72 276.2 407 41.0
Hma1.2p1_0109F.1_g052250 Hydrangea macrophylla HOM05D001993 ORTHO05D009037 5.1e-72 276.2 403 40.2
Sopen09g006100 Solanum pennellii HOM05D001993 ORTHO05D009037 5.1e-72 276.2 407 41.0
Sabra17G0040600 Salix brachista HOM05D001993 ORTHO05D009037 8.7e-72 275.4 407 39.6
AT1G80570 Arabidopsis thaliana HOM05D001993 ORTHO05D009037 1.9e-71 274.2 407 40.5
Solyc09g011370.3 Solanum lycopersicum HOM05D001993 ORTHO05D009037 2.5e-71 273.9 408 40.9
Lsat_1_v5_gn_5_7881 Lactuca sativa HOM05D001993 ORTHO05D009037 3.3e-71 273.5 408 38.7
CANSAT56G0483 Cannabis sativa HOM05D001993 ORTHO05D009037 5.6e-71 272.7 401 40.4
ClCG09G003170 Citrullus lanatus HOM05D001993 ORTHO05D009037 5.6e-71 272.7 404 38.6
Aa31LG4G850 Aethionema arabicum HOM05D001993 ORTHO05D009037 7.3e-71 272.3 404 41.1
BcaC03g15951 Brassica carinata HOM05D001993 ORTHO05D009037 2.8e-70 270.4 399 41.9
BolC2t09726H Brassica oleracea HOM05D001993 ORTHO05D009037 4.7e-70 269.6 400 41.5
CDE05G1651 Ceratophyllum demersum HOM05D001993 ORTHO05D009037 4.7e-70 269.6 480 44.6
MELO3C023452.2 Cucumis melo HOM05D001993 ORTHO05D009037 4.7e-70 269.6 397 39.0
arahy.Tifrunner.gnm1.ann1.8N7B8R Arachis hypogaea HOM05D001993 ORTHO05D009037 8.1e-70 268.9 406 38.4
PGR031G2325 Punica granatum HOM05D001993 ORTHO05D009037 2.4e-69 267.3 402 41.0
SalBow7G0151 Salvia bowleyana HOM05D001993 ORTHO05D009037 6.9e-69 265.8 408 39.5
QL05p033907 Quercus lobata HOM05D001993 ORTHO05D009037 1.2e-68 265.0 408 39.2
Actinidia30712 Actinidia chinensis HOM05D001993 ORTHO05D009037 3.8e-67 260.0 380 41.6
AUR62016603 Chenopodium quinoa HOM05D001993 ORTHO05D009037 1.1e-66 258.5 387 40.6
Thhalv10018507m.g Eutrema salsugineum HOM05D001993 ORTHO05D009037 1.9e-66 257.7 405 40.0
BcaB05g25256 Brassica carinata HOM05D001993 ORTHO05D009037 1.2e-65 255.0 397 38.3
Cc04_g04800 Coffea canephora HOM05D001993 ORTHO05D009037 2.1e-65 254.2 407 37.8
AUR62011454 Chenopodium quinoa HOM05D001993 ORTHO05D009037 2.7e-65 253.8 384 40.1
GSVIVG01017521001 Vitis vinifera HOM05D001993 ORTHO05D009037 6.0e-65 252.7 405 40.0
ECA246G3767 Erigeron canadensis HOM05D001993 ORTHO05D009037 1.0e-64 251.9 397 39.0
AL2G40860 Arabidopsis lyrata HOM05D001993 ORTHO05D009037 2.3e-64 250.8 404 38.6
Nitab4.5_0005460g0010 Nicotiana tabacum HOM05D001993 ORTHO05D009037 2.3e-64 250.8 407 38.8
HanXRQChr05g0140811 Helianthus annuus HOM05D001993 ORTHO05D009037 5.1e-64 249.6 400 38.0
Carub.0002s2697 Capsella rubella HOM05D001993 ORTHO05D009037 8.7e-64 248.8 389 39.1
Nn2g12225 Nelumbo nucifera HOM05D001993 ORTHO05D009037 1.6e-62 244.6 379 40.4
A02p23440 Brassica napus HOM05D002499 ORTHO05D009037 6.9e-61 239.2 401 39.2
Dinv38158 Davidia involucrata HOM05D001993 ORTHO05D004040 2.0e-60 237.7 330 43.0
Os12g0526600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 2.0e-60 237.7 203 62.1
BraA02t07336Z Brassica rapa HOM05D002499 ORTHO05D002812 2.6e-60 237.3 400 38.8
Sp5g35200 Schrenkiella parvula HOM05D001993 ORTHO05D009037 7.6e-60 235.7 406 37.2
Os04g0371600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.4e-58 231.5 296 48.3
C02p37140 Brassica napus HOM05D002499 ORTHO05D002812 9.3e-58 228.8 400 38.5
CARHR073940 Cardamine hirsuta HOM05D001993 ORTHO05D009037 1.0e-56 225.3 398 37.2
Sc12g0006740 Simmondsia chinensis HOM05D001993 ORTHO05D009037 2.5e-55 220.7 337 38.9
Hund06538 Selenicereus undatus HOM05D001993 ORTHO05D009037 4.8e-54 216.5 292 40.1
Os02g0798800 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 6.7e-48 196.1 178 53.9
SalBow6G3135 Salvia bowleyana HOM05D001993 ORTHO05D009037 8.7e-48 195.7 270 40.7
Os02g0798900 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 4.8e-46 189.9 186 57.5
SMO137G0150 Selaginella moellendorffii HOM05D001993 ORTHO05D009037 2.4e-45 187.6 417 32.6
Os04g0370300 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.6e-41 174.9 194 52.1
FAN02G3408 Fragaria x ananassa HOM05D001993 ORTHO05D009037 4.1e-37 160.2 225 40.4
FAN05G0349 Fragaria x ananassa HOM05D001993 ORTHO05D009037 4.1e-37 160.2 314 31.5
Mapoly0145s0024 Marchantia polymorpha HOM05D001993 ORTHO05D009037 2.6e-28 131.0 418 27.5
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 7.4e-15 86.3 338 28.7
PGSC0003DMG400002228 Solanum tuberosum HOM05D002813 ORTHO05D003203 2.2e-14 84.7 338 27.8
SEGI_38686 Sequoiadendron giganteum HOM05D002813 ORTHO05D003203 1.6e-12 78.6 341 24.9
Gorai.009G049800 Gossypium raimondii HOM05D002813 ORTHO05D003203 1.3e-11 75.5 335 27.8
Prupe.1G448200 Prunus persica HOM05D002813 ORTHO05D003203 1.3e-11 75.5 337 27.3
Gohir.A05G046700 Gossypium hirsutum HOM05D002813 ORTHO05D003203 5.0e-11 73.6 319 26.6
Gohir.D05G048500 Gossypium hirsutum HOM05D002813 ORTHO05D003203 5.0e-11 73.6 319 27.3
Nitab4.5_0028416g0010 Nicotiana tabacum HOM05D002813 ORTHO05D003203 5.0e-11 73.6 341 27.3
QL12p041358 Quercus lobata HOM05D002813 ORTHO05D003203 2.5e-10 71.2 344 24.4
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 3.2e-10 70.9 346 26.3
QL12p041348 Quercus lobata HOM05D002813 ORTHO05D003203 1.2e-09 68.9 324 26.9
SEGI_37199 Sequoiadendron giganteum HOM05D002813 ORTHO05D003203 1.6e-09 68.6 237 25.3
CDE05G0294 Ceratophyllum demersum HOM05D000530 ORTHO05D000621 6.1e-09 66.6 411 24.6
MSTRG.9106 Avicennia marina HOM05D002813 ORTHO05D003203 1.0e-08 65.9 335 25.1
MD15G1093400 Malus domestica HOM05D002813 ORTHO05D003203 4.0e-08 63.9 320 25.3
FAN25G2464 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.8e-08 62.8 306 24.2
Zm00001eb258000 Zea mays HOM05D001993 ORTHO05D009037 8.8e-08 62.8 75 42.7
arahy.Tifrunner.gnm1.ann1.T7YMEL Arachis hypogaea HOM05D001219 ORTHO05D001017 1.5e-07 62.0 455 20.2
FAN06G0128 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.5e-07 62.0 306 23.9
Glyma.07G189800 Glycine max HOM05D000530 ORTHO05D000621 1.5e-07 62.0 386 25.6
Actinidia14674 Actinidia chinensis HOM05D002813 ORTHO05D003203 2.0e-07 61.6 239 26.8
Ciclev10010367m.g Citrus clementina HOM05D002813 ORTHO05D003203 2.0e-07 61.6 323 25.7
FAN06G0370 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.0e-07 61.6 306 23.9
TAR626G1934 Trochodendron aralioides HOM05D002813 ORTHO05D003203 2.0e-07 61.6 338 26.0
FvH4_7g29850 Fragaria vesca HOM05D002813 ORTHO05D003203 3.4e-07 60.8 306 23.9
Cc08_g09560 Coffea canephora HOM05D002813 ORTHO05D003203 5.7e-07 60.1 346 25.7
Atru.chr7.2088 Acer truncatum HOM05D002813 ORTHO05D003203 7.5e-07 59.7 301 25.6
SMO228G0132 Selaginella moellendorffii HOM05D002762 ORTHO05D004643 9.7e-07 59.3 208 29.8
VMungo0251G2051 Vigna mungo HOM05D000530 ORTHO05D000621 9.7e-07 59.3 383 25.3
CSS0022259 Camellia sinensis var. sinensis HOM05D002813 ORTHO05D003203 1.3e-06 58.9 197 26.9
Dinv27902 Davidia involucrata HOM05D002813 ORTHO05D003203 1.3e-06 58.9 211 27.5
Prupe.6G286100 Prunus persica HOM05D002125 ORTHO05D002105 1.3e-06 58.9 290 22.1
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 1.7e-06 58.5 300 23.3
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 2.2e-06 58.2 397 24.2
FAN16G0815 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.2e-06 58.2 370 23.0
FAN25G1955 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.2e-06 58.2 374 22.7
FAN27G1144 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.7e-06 57.4 319 27.3
Phvul.002G221400 Phaseolus vulgaris HOM05D000530 ORTHO05D000621 3.7e-06 57.4 198 28.8
FAN14G4978 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.3e-06 56.2 283 23.3
FAN14G5169 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.3e-06 56.2 318 23.3


User provided reference genes

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