Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 1.3e-180 636.3 331 100.0
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 3.0e-81 306.2 326 55.2
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.3e-79 300.8 327 54.4
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 8.2e-79 298.1 327 51.7
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 1.1e-78 297.7 327 53.2
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.4e-78 297.4 330 53.9
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.4e-78 296.6 327 49.5
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.1e-78 296.2 326 54.0
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 4.1e-78 295.8 326 51.5
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 7.0e-78 295.0 325 52.6
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 9.1e-78 294.7 325 53.8
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 1.2e-77 294.3 326 51.2
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.2e-76 290.0 333 52.6
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 2.9e-76 289.7 324 51.9
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 6.5e-76 288.5 324 48.8
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 6.5e-76 288.5 329 52.9
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 1.5e-75 287.3 331 54.1
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 5.5e-75 285.4 331 51.7
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 7.2e-75 285.0 328 49.1
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 9.4e-75 284.6 329 49.5
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 1.2e-74 284.3 330 49.7
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 1.2e-74 284.3 326 53.1
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.6e-74 283.9 334 52.7
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.6e-74 282.7 326 52.1
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 8.0e-74 281.6 329 50.2
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.4e-73 280.8 325 49.8
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 1.4e-73 280.8 329 48.6
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 2.3e-73 280.0 327 48.9
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 4.0e-73 279.3 329 48.9
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 4.0e-73 279.3 329 48.3
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 4.0e-73 279.3 330 49.4
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 5.2e-73 278.9 324 49.4
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 5.2e-73 278.9 330 49.7
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 2.0e-72 276.9 332 49.4
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.0e-72 276.9 329 50.5
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 5.7e-72 275.4 328 49.4
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 5.7e-72 275.4 320 50.3
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 7.5e-72 275.0 325 50.2
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 9.7e-72 274.6 332 49.1
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 9.7e-72 274.6 336 48.5
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 2.2e-71 273.5 334 48.5
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.8e-71 273.1 329 49.5
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 3.7e-71 272.7 328 48.2
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 4.8e-71 272.3 335 51.6
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.1e-70 271.2 342 47.4
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.4e-70 270.8 338 49.7
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.4e-70 270.8 313 50.2
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 3.1e-70 269.6 343 46.9
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 4.1e-70 269.2 330 48.2
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 5.3e-70 268.9 327 46.8
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 7.0e-70 268.5 330 47.0
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 9.1e-70 268.1 328 47.0
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 9.1e-70 268.1 331 47.7
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 9.1e-70 268.1 327 47.4
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.2e-69 267.7 327 47.1
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 2.0e-69 266.9 283 53.0
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 2.7e-69 266.5 320 50.6
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 3.5e-69 266.2 325 46.2
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 4.5e-69 265.8 332 46.1
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 3.8e-68 262.7 338 49.1
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 8.5e-68 261.5 329 47.4
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.5e-67 260.8 339 49.9
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 1.9e-67 260.4 331 46.8
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.9e-67 260.4 321 47.4
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.5e-67 260.0 334 47.6
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.5e-67 260.0 272 52.2
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.5e-67 260.0 347 44.7
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 4.2e-67 259.2 275 52.0
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.5e-67 258.8 347 44.4
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 5.5e-67 258.8 280 51.1
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 5.5e-67 258.8 343 46.6
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 9.4e-67 258.1 329 46.2
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 2.1e-66 256.9 338 49.7
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.7e-66 256.5 322 47.2
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 6.1e-66 255.4 322 46.9
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 8.0e-66 255.0 326 46.0
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.0e-65 254.6 347 44.4
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.0e-65 254.6 389 42.7
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 1.4e-65 254.2 358 43.6
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 3.0e-65 253.1 324 46.3
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 4.0e-65 252.7 336 45.8
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 5.2e-65 252.3 332 45.8
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 6.8e-65 251.9 271 52.8
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 2.0e-64 250.4 267 52.1
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 2.6e-64 250.0 336 47.3
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 3.4e-64 249.6 340 49.4
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 9.8e-64 248.1 337 49.3
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.3e-63 247.7 325 46.5
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.7e-63 247.3 282 50.7
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.7e-63 246.1 322 46.0
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 5.4e-62 242.3 345 43.2
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 5.4e-62 242.3 329 44.7
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 7.0e-62 241.9 327 44.6
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 9.1e-62 241.5 335 45.7
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 9.1e-62 241.5 336 42.9
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 9.1e-62 241.5 336 42.9
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 9.1e-62 241.5 336 42.9
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.2e-61 241.1 328 44.8
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 1.6e-61 240.7 333 42.6
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.6e-61 240.7 306 46.1
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 7.7e-61 238.4 279 48.0
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 7.7e-61 238.4 214 62.1
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.3e-60 237.7 333 43.8
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 2.2e-60 236.9 313 46.3
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 8.5e-60 235.0 285 47.7
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.1e-59 234.6 285 50.5
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 4.2e-59 232.6 335 43.3
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 4.2e-59 232.6 285 47.4
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 5.5e-59 232.3 336 42.9
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.2e-58 231.1 336 42.3
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.2e-58 231.1 336 42.3
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.6e-58 230.7 333 45.6
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 3.6e-58 229.6 337 43.9
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 6.1e-58 228.8 334 43.4
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 8.0e-58 228.4 336 42.3
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 1.4e-57 227.6 212 56.6
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.4e-57 227.6 338 45.9
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.8e-57 227.3 270 48.5
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 3.0e-57 226.5 337 43.3
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 6.8e-57 225.3 336 42.9
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 6.8e-57 225.3 318 41.2
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 2.6e-56 223.4 376 42.0
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 2.6e-56 223.4 333 45.9
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 3.4e-56 223.0 250 51.2
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 7.5e-56 221.9 334 43.7
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 2.8e-55 219.9 326 40.5
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 1.1e-54 218.0 339 42.2
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 3.1e-54 216.5 327 41.0
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 3.1e-54 216.5 334 45.8
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.0e-53 213.8 250 50.8
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 1.3e-52 211.1 366 39.9
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 2.3e-52 210.3 333 43.5
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 2.3e-52 210.3 238 47.9
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 3.3e-51 206.5 296 41.9
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.6e-50 204.1 292 42.1
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.3e-49 200.3 331 42.0
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.5e-48 197.6 327 41.3
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 4.9e-47 192.6 172 57.6
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 6.4e-47 192.2 234 50.0
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.3e-44 183.7 306 40.2
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 2.3e-41 173.7 274 41.2
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 3.1e-41 173.3 228 44.7
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 2.6e-40 170.2 243 41.6
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 9.8e-40 168.3 152 53.3
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 3.2e-38 163.3 152 55.3
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.2e-38 163.3 208 51.0
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 1.2e-37 161.4 158 53.8
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.3e-36 157.1 204 49.0
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 8.6e-36 155.2 235 43.0
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.3e-35 152.1 204 50.0
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.1e-34 150.6 161 52.2
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.5e-32 144.4 204 46.1
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.1e-30 135.6 139 45.3
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.7e-29 133.7 199 44.7
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.6e-26 123.2 115 49.6
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 2.6e-24 117.1 127 44.1
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 9.2e-22 108.6 134 49.3
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 7.8e-21 105.5 174 41.4
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.7e-20 104.4 144 45.8
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.1e-19 101.7 120 42.5
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 1.9e-19 100.9 220 33.6
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 7.3e-19 99.0 146 43.2
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.5e-16 91.3 88 47.7
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 2.0e-16 90.9 97 49.5
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 1.9e-14 84.3 88 39.8
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 6.2e-10 69.3 248 27.4
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 4.0e-09 66.6 53 60.4
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.0e-08 64.3 137 32.8
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 8.4e-07 58.9 79 48.1
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.9e-06 57.8 78 44.9


User provided reference genes

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