Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0498500 Oryza sativa ssp. japonica HOM05D007388 ORTHO05D009421 7.6e-111 404.1 236 100.0
Zm00001eb409580 Zea mays HOM05D007388 ORTHO05D009421 7.1e-85 317.8 245 73.9
Sabra06G0171500 Salix brachista HOM05D007388 ORTHO05D009421 2.2e-46 189.9 163 60.1
ATR0598G070 Amborella trichopoda HOM05D007388 ORTHO05D009421 3.8e-46 189.1 148 63.5
MBI19_g11844_MAGBIO Magnolia biondii HOM05D007388 ORTHO05D009421 8.5e-46 188.0 149 65.1
Potri.006G221900 Populus trichocarpa HOM05D007388 ORTHO05D009421 1.5e-45 187.2 163 58.9
Nn8g38703 Nelumbo nucifera HOM05D007388 ORTHO05D009421 1.9e-45 186.8 167 56.9
PGR044G0912 Punica granatum HOM05D007388 ORTHO05D009421 2.5e-45 186.4 172 56.4
MSTRG.25983 Avicennia marina HOM05D007388 ORTHO05D009421 4.2e-45 185.7 172 59.3
Eucgr.C03150 Eucalyptus grandis HOM05D007388 ORTHO05D009421 4.7e-44 182.2 145 62.1
TAR383G1008 Trochodendron aralioides HOM05D007388 ORTHO05D009421 4.7e-44 182.2 174 55.7
Peaxi162Scf00596g00105 Petunia axillaris HOM05D007388 ORTHO05D009421 6.1e-44 181.8 148 60.8
QL02p016663 Quercus lobata HOM05D007388 ORTHO05D009421 6.1e-44 181.8 168 56.5
Nitab4.5_0001705g0020 Nicotiana tabacum HOM05D007388 ORTHO05D009421 1.0e-43 181.0 147 60.5
AL6G32850 Arabidopsis lyrata HOM05D007388 ORTHO05D009421 2.3e-43 179.9 169 56.2
COL.COLO4_21128 Corchorus olitorius HOM05D007388 ORTHO05D009421 4.0e-43 179.1 147 62.6
Lalb_Chr11g0063321 Lupinus albus HOM05D007388 ORTHO05D009421 5.2e-43 178.7 148 58.8
AUR62020582 Chenopodium quinoa HOM05D007388 ORTHO05D009421 6.8e-43 178.3 148 60.1
AT5G21430 Arabidopsis thaliana HOM05D007388 ORTHO05D009421 1.5e-42 177.2 169 55.6
CsaV3_4G036020 Cucumis sativus L. HOM05D007388 ORTHO05D009421 1.5e-42 177.2 143 60.1
Ciclev10009451m.g Citrus clementina HOM05D007388 ORTHO05D009421 2.0e-42 176.8 166 56.6
Sed0027665 Sechium edule HOM05D007388 ORTHO05D009421 2.0e-42 176.8 161 55.3
Carub.0006s1952 Capsella rubella HOM05D007388 ORTHO05D009421 2.6e-42 176.4 171 54.4
BcaC04g19512 Brassica carinata HOM05D007388 ORTHO05D009421 3.4e-42 176.0 169 53.8
A10p18840 Brassica napus HOM05D007388 ORTHO05D009421 3.4e-42 176.0 169 53.8
C09p54850 Brassica napus HOM05D007388 ORTHO05D009421 3.4e-42 176.0 169 53.8
BolC9t58346H Brassica oleracea HOM05D007388 ORTHO05D009421 3.4e-42 176.0 169 53.8
BraA10t43964Z Brassica rapa HOM05D007388 ORTHO05D009421 3.4e-42 176.0 169 53.8
MELO3C016910.2 Cucumis melo HOM05D007388 ORTHO05D009421 3.4e-42 176.0 143 59.4
ECA240G1505 Erigeron canadensis HOM05D007388 ORTHO05D009421 7.5e-42 174.9 179 53.1
Migut.A00083 Erythranthe guttata HOM05D007388 ORTHO05D009421 9.8e-42 174.5 147 60.5
CARHR191660 Cardamine hirsuta HOM05D007388 ORTHO05D009421 1.3e-41 174.1 170 54.7
AUR62009088 Chenopodium quinoa HOM05D007388 ORTHO05D009421 1.3e-41 174.1 148 59.5
THA.LOC104799581 Tarenaya hassleriana HOM05D007388 ORTHO05D009421 1.3e-41 174.1 162 56.8
BcaB08g36472 Brassica carinata HOM05D007388 ORTHO05D009421 2.8e-41 172.9 166 54.2
CSS0004113 Camellia sinensis var. sinensis HOM05D007388 ORTHO05D009421 3.7e-41 172.6 145 57.9
MD15G1051600 Malus domestica HOM05D007388 ORTHO05D009421 3.7e-41 172.6 171 52.6
Manes.16G084900 Manihot esculenta HOM05D007388 ORTHO05D009421 6.3e-41 171.8 147 57.1
Atru.chr7.1857 Acer truncatum HOM05D007388 ORTHO05D009421 8.3e-41 171.4 168 54.8
Solyc06g082970.3 Solanum lycopersicum HOM05D007388 ORTHO05D009421 1.4e-40 170.6 145 59.3
ClCG05G015710 Citrullus lanatus HOM05D007388 ORTHO05D009421 1.8e-40 170.2 161 55.3
Dinv41838 Davidia involucrata HOM05D007388 ORTHO05D009421 1.8e-40 170.2 151 59.6
Thhalv10014636m.g Eutrema salsugineum HOM05D007388 ORTHO05D009421 1.8e-40 170.2 170 51.8
CDE06G1148 Ceratophyllum demersum HOM05D007388 ORTHO05D009421 2.4e-40 169.9 151 56.3
Sp6g23310 Schrenkiella parvula HOM05D007388 ORTHO05D009421 2.4e-40 169.9 169 52.7
Sopen06g034360 Solanum pennellii HOM05D007388 ORTHO05D009421 2.4e-40 169.9 145 59.3
Cfa018015 Carpinus fangiana HOM05D007388 ORTHO05D009421 3.1e-40 169.5 173 52.6
PGSC0003DMG400027673 Solanum tuberosum HOM05D007388 ORTHO05D009421 3.1e-40 169.5 164 54.9
TWI63G1062 Tripterygium wilfordii HOM05D007388 ORTHO05D009421 3.1e-40 169.5 161 54.7
GSVIVG01035454001 Vitis vinifera HOM05D007388 ORTHO05D009421 3.1e-40 169.5 147 59.9
CAN.G246.5 Capsicum annuum HOM05D007388 ORTHO05D009421 4.1e-40 169.1 145 59.3
HanXRQChr04g0097861 Helianthus annuus HOM05D007388 ORTHO05D009421 4.1e-40 169.1 175 56.0
RcHm_v2.0_Chr6g0311651 Rosa chinensis HOM05D007388 ORTHO05D009421 4.1e-40 169.1 149 55.7
Aa31LG1G13520 Aethionema arabicum HOM05D007388 ORTHO05D009421 5.4e-40 168.7 184 51.1
Gohir.A05G039100 Gossypium hirsutum HOM05D007388 ORTHO05D009421 5.4e-40 168.7 164 53.0
FvH4_2g31130 Fragaria vesca HOM05D007388 ORTHO05D009421 9.1e-40 167.9 145 55.9
CiPaw.16G070200 Carya illinoinensis HOM05D007388 ORTHO05D009421 4.5e-39 165.6 162 54.3
Duzib168G1804 Durio zibethinus HOM05D007388 ORTHO05D009421 4.5e-39 165.6 169 52.1
Gohir.D05G040600 Gossypium hirsutum HOM05D007388 ORTHO05D009421 4.5e-39 165.6 164 52.4
FAN24G3326 Fragaria x ananassa HOM05D007388 ORTHO05D009421 5.9e-39 165.2 145 55.2
FAN20G0472 Fragaria x ananassa HOM05D007388 ORTHO05D009421 1.3e-38 164.1 160 51.2
CANSAT25G2576 Cannabis sativa HOM05D007388 ORTHO05D009421 2.9e-38 162.9 149 57.7
Lj1g0010451 Lotus japonicus HOM05D007388 ORTHO05D009421 2.9e-38 162.9 158 51.9
DCAR_003716 Daucus carota HOM05D007388 ORTHO05D009421 1.9e-37 160.2 147 55.8
Psat5g102720 Pisum sativum HOM05D007388 ORTHO05D009421 1.9e-37 160.2 143 53.1
PSO421G0687 Papaver somniferum HOM05D007388 ORTHO05D009421 3.3e-37 159.5 165 50.9
Glyma.04G055400 Glycine max HOM05D007388 ORTHO05D009421 9.5e-37 157.9 165 53.3
Rhsim10G0152000 Rhododendron simsii HOM05D007388 ORTHO05D009421 9.5e-37 157.9 137 54.0
FAN27G0155 Fragaria x ananassa HOM05D007388 ORTHO05D009421 1.2e-36 157.5 179 45.8
Glyma.06G055600 Glycine max HOM05D007388 ORTHO05D009421 1.6e-36 157.1 145 55.9
TPR.G3529 Trifolium pratense HOM05D007388 ORTHO05D009421 1.6e-36 157.1 143 52.4
VMungo1309G3057 Vigna mungo HOM05D007388 ORTHO05D009421 4.7e-36 155.6 148 54.1
Atru.BG.20.p Acer truncatum HOM05D007388 ORTHO05D009421 8.0e-36 154.8 128 59.4
EL10Ac2g03792 Beta vulgaris HOM05D007388 ORTHO05D009421 8.0e-36 154.8 151 53.0
Medtr3g104980 Medicago truncatula HOM05D007388 ORTHO05D009421 1.8e-35 153.7 143 51.7
Actinidia25694 Actinidia chinensis HOM05D007388 ORTHO05D009421 1.2e-34 151.0 146 52.1
CDE07G0202 Ceratophyllum demersum HOM05D007388 ORTHO05D001048 1.5e-34 150.6 150 52.0
Phvul.009G081500 Phaseolus vulgaris HOM05D007388 ORTHO05D009421 3.4e-34 149.4 148 52.0
Lj7C227T7 Lonicera japonica HOM05D007388 ORTHO05D009421 5.7e-34 148.7 147 53.1
Thecc.09G062100 Theobroma cacao HOM05D007388 ORTHO05D009421 7.5e-34 148.3 150 52.7
Oeu000765.1 Olea europaea HOM05D007388 ORTHO05D009421 2.2e-33 146.7 224 40.6
arahy.Tifrunner.gnm1.ann1.P6UV73 Arachis hypogaea HOM05D007388 ORTHO05D009421 2.9e-33 146.4 141 51.8
Aqoxy7G01075 Aquilegia oxysepala HOM05D007388 ORTHO05D009421 2.7e-31 139.8 130 55.4
arahy.Tifrunner.gnm1.ann1.044LWD Arachis hypogaea HOM05D000560 ORTHO05D000417 7.8e-31 138.3 141 50.4
Gorai.009G041100 Gossypium raimondii HOM05D007388 ORTHO05D009421 5.0e-30 135.6 137 51.1
Cc08_g01260 Coffea canephora HOM05D007388 ORTHO05D009421 6.6e-30 135.2 127 56.7
Lj7C225T7 Lonicera japonica HOM05D007388 ORTHO05D009421 1.5e-29 134.0 147 49.7
Nitab4.5_0000268g0090 Nicotiana tabacum HOM05D007388 ORTHO05D009421 1.9e-29 133.7 147 49.7
Lsat_1_v5_gn_7_58400 Lactuca sativa HOM05D007388 ORTHO05D009421 2.5e-29 133.3 136 52.9
vmacro12914 Vaccinium macrocarpon HOM05D007388 ORTHO05D009421 5.6e-29 132.1 146 45.9
Prupe.1G405600 Prunus persica HOM05D007388 ORTHO05D009421 7.3e-29 131.7 114 59.6
Ca_15836_v3 Cicer arietinum L. HOM05D007388 ORTHO05D009421 5.8e-26 122.1 113 52.2
Pp3c4_14700 Physcomitrium patens HOM05D007388 ORTHO05D009421 3.0e-22 109.8 165 39.4
AagrBONN_evm.TU.Sc2ySwM_368.3296 Anthoceros agrestis HOM05D007388 ORTHO05D009421 1.1e-21 107.8 168 38.7
Pp3c12_9640 Physcomitrium patens HOM05D007388 ORTHO05D009421 1.1e-21 107.8 152 40.8
unitig_4.g30329 Utricularia gibba HOM05D007388 ORTHO05D009421 1.9e-16 90.5 79 59.5
Mapoly0129s0003 Marchantia polymorpha HOM05D007388 ORTHO05D009421 3.6e-12 76.3 149 33.6
Hma1.2p1_0231F.1_g097390 Hydrangea macrophylla HOM05D007388 ORTHO05D009421 5.2e-11 72.4 73 50.7
BNapus_Darmor_BZH_scaffold_38p01020 Brassica napus HOM05D007388 ORTHO05D009421 3.7e-09 66.2 63 54.0
SMO223G0044 Selaginella moellendorffii HOM05D007480 ORTHO05D009460 4.9e-09 65.9 97 40.2
Mapoly0007s0106 Marchantia polymorpha HOM05D007480 ORTHO05D009460 2.7e-07 60.1 95 37.9


User provided reference genes

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