Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.7e-209 732.6 420 100.0
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.6e-85 320.1 326 61.3
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 3.3e-85 319.7 241 73.0
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 2.0e-77 293.9 246 67.1
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 2.6e-77 293.5 246 67.9
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 3.4e-77 293.1 323 56.0
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 7.5e-77 292.0 321 56.1
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 9.8e-77 291.6 315 58.1
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.7e-76 290.8 326 56.4
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.2e-76 290.4 240 67.5
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 2.8e-76 290.0 328 57.0
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 4.1e-75 286.2 245 67.8
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 7.0e-75 285.4 308 56.5
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 7.0e-75 285.4 319 56.4
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.2e-74 284.6 312 56.1
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 2.0e-74 283.9 250 65.6
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.7e-74 283.5 333 54.7
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 4.5e-74 282.7 247 66.0
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 4.5e-74 282.7 334 54.5
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 7.7e-74 282.0 321 55.1
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.0e-73 281.6 337 54.0
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 1.5e-72 277.7 246 65.4
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 2.5e-72 276.9 246 64.6
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 2.5e-72 276.9 318 56.0
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 4.2e-72 276.2 245 61.6
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 5.5e-72 275.8 245 65.3
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 5.5e-72 275.8 245 65.3
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.6e-71 274.2 237 65.4
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 3.6e-71 273.1 327 53.5
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 4.7e-71 272.7 332 53.9
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 4.7e-71 272.7 331 55.9
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 1.4e-70 271.2 328 53.4
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 1.4e-70 271.2 311 56.6
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 2.3e-70 270.4 243 62.6
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.3e-70 270.4 327 54.1
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 3.0e-70 270.0 325 53.5
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 3.0e-70 270.0 315 55.6
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 5.2e-70 269.2 325 53.5
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 5.2e-70 269.2 321 54.8
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 8.9e-70 268.5 329 52.9
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 8.9e-70 268.5 329 52.9
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 2.0e-69 267.3 326 53.1
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.0e-69 267.3 319 54.9
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 2.0e-69 267.3 248 61.3
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 2.6e-69 266.9 325 55.7
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 3.4e-69 266.5 329 53.8
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 5.7e-69 265.8 330 53.0
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 5.7e-69 265.8 325 54.5
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 5.7e-69 265.8 320 55.6
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 5.7e-69 265.8 320 53.8
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 1.3e-68 264.6 320 55.0
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.7e-68 264.2 319 53.9
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.7e-68 264.2 326 52.8
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 2.8e-68 263.5 326 54.9
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 6.3e-68 262.3 327 53.5
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 8.3e-68 261.9 329 52.6
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 8.3e-68 261.9 304 53.0
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 1.1e-67 261.5 314 55.4
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 3.1e-67 260.0 335 50.4
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 4.1e-67 259.6 337 50.7
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 5.4e-67 259.2 323 53.9
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.6e-66 257.7 332 52.7
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 3.5e-66 256.5 325 52.6
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 3.5e-66 256.5 333 50.5
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 5.9e-66 255.8 217 68.2
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 5.9e-66 255.8 327 52.0
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 7.8e-66 255.4 258 58.1
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.0e-65 255.0 325 51.7
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 1.7e-65 254.2 329 50.8
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.9e-65 253.4 263 58.2
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.5e-64 250.4 237 60.8
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 7.3e-64 248.8 307 53.1
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 1.2e-63 248.1 246 56.5
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 1.6e-63 247.7 213 69.0
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 2.1e-63 247.3 257 57.6
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 3.6e-63 246.5 242 59.1
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 4.7e-63 246.1 317 53.0
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 4.7e-63 246.1 328 49.4
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.4e-62 244.6 324 50.0
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 1.4e-62 244.6 327 49.2
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 1.4e-62 244.6 327 49.2
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 1.8e-62 244.2 211 66.8
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.2e-61 241.5 246 55.3
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 1.2e-61 241.5 285 53.0
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 1.5e-61 241.1 317 50.8
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 3.4e-61 240.0 346 46.8
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 4.4e-61 239.6 335 47.8
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 5.8e-61 239.2 329 48.6
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 5.8e-61 239.2 345 49.9
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 9.8e-61 238.4 321 52.3
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 6.4e-60 235.7 241 58.9
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 1.4e-59 234.6 241 58.5
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 4.1e-59 233.0 238 55.0
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 7.8e-58 228.8 312 50.0
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 3.0e-57 226.9 219 62.1
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 3.9e-57 226.5 231 58.0
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 8.6e-57 225.3 218 62.4
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.6e-55 221.1 293 51.2
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.6e-55 221.1 325 48.6
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 4.7e-55 219.5 235 55.7
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 4.0e-54 216.5 313 49.8
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 4.0e-54 216.5 224 58.9
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 1.2e-53 214.9 313 48.6
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 1.2e-53 214.9 218 65.6
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.0e-53 214.2 215 60.0
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 3.4e-53 213.4 237 55.7
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 6.4e-52 209.1 331 45.9
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 4.6e-50 203.0 348 43.1
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 6.0e-50 202.6 320 45.3
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 1.0e-49 201.8 401 40.9
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 2.3e-49 200.7 259 49.8
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 3.0e-49 200.3 265 48.7
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 3.3e-48 196.8 334 45.8
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 5.6e-48 196.1 207 59.9
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 2.1e-47 194.1 187 64.2
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 5.2e-46 189.5 242 51.2
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 6.8e-46 189.1 267 48.7
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 8.9e-46 188.7 328 42.7
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 2.0e-45 187.6 327 44.6
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 1.7e-44 184.5 244 48.8
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 1.7e-44 184.5 244 48.8
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 2.9e-44 183.7 343 40.5
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 7.1e-43 179.1 250 47.6
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 7.1e-43 179.1 250 47.6
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 9.2e-43 178.7 250 47.6
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 3.9e-41 173.3 134 73.9
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 1.6e-39 167.9 236 47.9
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 5.2e-38 162.9 104 77.9
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 4.7e-31 139.8 222 46.8
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.2e-26 125.2 135 54.8
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 2.1e-26 124.4 150 44.7
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 3.0e-25 120.6 129 48.8
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 2.5e-24 117.5 135 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 8.1e-23 112.5 271 34.7
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 1.5e-21 108.2 144 41.7
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.9e-19 101.3 121 43.0
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 2.1e-18 97.8 139 41.0
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.1e-17 93.2 126 39.7
Os12g0465800 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D049646 3.3e-16 90.5 120 53.3
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.3e-15 88.6 117 57.3
Zm00001eb132960 Zea mays HOM05D004645 ORTHO05D049646 1.2e-13 82.0 116 49.1
HPP92_027982 Vanilla planifolia HOM05D004645 ORTHO05D005693 4.8e-07 60.1 98 50.0


User provided reference genes

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