Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0465100 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 8.9e-66 253.4 127 100.0
Os12g0465000 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 7.4e-36 154.1 117 60.7
Zm00001eb112970 Zea mays HOM05D018994 ORTHO05D001647 2.3e-21 105.9 116 46.6
Os11g0502700 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 3.7e-19 98.6 101 46.5
Zm00001eb170050 Zea mays HOM05D018994 ORTHO05D001647 3.7e-19 98.6 100 49.0
Os11g0479000 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 1.8e-18 96.3 127 43.3
MBI07_g02003_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 4.3e-12 75.1 110 35.5
Manes.02G218600 Manihot esculenta HOM05D001817 ORTHO05D001647 7.4e-12 74.3 125 32.0
Zm00001eb266630 Zea mays HOM05D018994 ORTHO05D001647 9.7e-12 73.9 79 49.4
Ciclev10009917m.g Citrus clementina HOM05D001817 ORTHO05D001647 3.7e-11 72.0 120 32.5
TAR629G0897 Trochodendron aralioides HOM05D001817 ORTHO05D001647 8.2e-11 70.9 116 30.2
TAR629G2934 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.1e-10 70.5 116 30.2
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 1.8e-10 69.7 122 32.8
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 1.8e-10 69.7 122 32.8
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 2.4e-10 69.3 120 32.5
ATR0582G316 Amborella trichopoda HOM05D001817 ORTHO05D001647 3.1e-10 68.9 117 36.8
Solyc10g054673.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 5.3e-10 68.2 124 30.6
AUR62029426 Chenopodium quinoa HOM05D001817 ORTHO05D001647 9.1e-10 67.4 120 33.3
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 9.1e-10 67.4 122 32.0
MBI18_g29804_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 9.1e-10 67.4 101 35.6
TAR622G0534 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.2e-09 67.0 104 31.7
ClCG05G016690 Citrullus lanatus HOM05D001817 ORTHO05D001647 1.5e-09 66.6 121 33.9
CsaV3_3G046190 Cucumis sativus L. HOM05D001817 ORTHO05D001647 1.5e-09 66.6 109 33.0
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 2.0e-09 66.2 122 32.0
Solyc10g054677.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 2.0e-09 66.2 124 29.8
Sopen10g024540 Solanum pennellii HOM05D001817 ORTHO05D001647 2.6e-09 65.9 127 30.7
TAR622G1058 Trochodendron aralioides HOM05D001817 ORTHO05D001647 3.4e-09 65.5 119 26.9
Lalb_Chr07g0186901 Lupinus albus HOM05D001817 ORTHO05D001647 7.7e-09 64.3 121 32.2
Psat0s3990g0120 Pisum sativum HOM05D001817 ORTHO05D001647 7.7e-09 64.3 117 30.8
Sed0003760 Sechium edule HOM05D001817 ORTHO05D001647 7.7e-09 64.3 119 31.1
Glyma.08G357100 Glycine max HOM05D001817 ORTHO05D001647 1.0e-08 63.9 115 35.7
EL10Ac6g15442 Beta vulgaris HOM05D001817 ORTHO05D001647 2.2e-08 62.8 111 33.3
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 2.2e-08 62.8 122 29.5
TPR.G3270 Trifolium pratense HOM05D001817 ORTHO05D001647 2.2e-08 62.8 109 34.9
TAR622G0422 Trochodendron aralioides HOM05D001817 ORTHO05D001647 2.2e-08 62.8 91 33.0
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 2.9e-08 62.4 115 31.3
FAN04G2963 Fragaria x ananassa HOM05D001817 ORTHO05D001647 3.8e-08 62.0 119 32.8
PGSC0003DMG400004421 Solanum tuberosum HOM05D001817 ORTHO05D001647 3.8e-08 62.0 127 30.7
FvH4_5g03660 Fragaria vesca HOM05D001817 ORTHO05D001647 5.0e-08 61.6 119 31.9
FAN04G1340 Fragaria x ananassa HOM05D001817 ORTHO05D001647 5.0e-08 61.6 119 32.8
FAN08G2754 Fragaria x ananassa HOM05D001817 ORTHO05D001647 5.0e-08 61.6 119 31.9
FAN18G1420 Fragaria x ananassa HOM05D001817 ORTHO05D001647 5.0e-08 61.6 119 31.9
MD08G1079500 Malus domestica HOM05D001817 ORTHO05D001647 5.0e-08 61.6 118 32.2
Psat0s2453g0040 Pisum sativum HOM05D001817 ORTHO05D001647 5.0e-08 61.6 116 35.3
Prupe.1G484100 Prunus persica HOM05D001817 ORTHO05D001647 5.0e-08 61.6 122 28.7
Sopen10g024580 Solanum pennellii HOM05D001817 ORTHO05D001647 5.0e-08 61.6 78 37.2
QL07p000821 Quercus lobata HOM05D001817 ORTHO05D001647 6.5e-08 61.2 109 31.2
VMungo0720G1259 Vigna mungo HOM05D001817 ORTHO05D001647 6.5e-08 61.2 102 33.3
FAN15G2483 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.1e-07 60.5 121 31.4
Glyma.20G204300 Glycine max HOM05D001817 ORTHO05D001647 1.1e-07 60.5 103 34.0
Lj4g0027202 Lotus japonicus HOM05D001817 ORTHO05D001647 1.1e-07 60.5 122 30.3
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 1.1e-07 60.5 122 29.5
Aqoxy5G03160 Aquilegia oxysepala HOM05D001817 ORTHO05D001647 1.4e-07 60.1 130 30.8
FAN24G1722 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.4e-07 60.1 121 30.6
Manes.16G124600 Manihot esculenta HOM05D001817 ORTHO05D001647 1.4e-07 60.1 122 27.9
Medtr2g438190 Medicago truncatula HOM05D001817 ORTHO05D001647 1.4e-07 60.1 120 30.8
FvH4_2g27480 Fragaria vesca HOM05D001817 ORTHO05D001647 1.9e-07 59.7 120 30.8
Lalb_Chr21g0316231 Lupinus albus HOM05D001817 ORTHO05D001647 1.9e-07 59.7 124 31.5
Medtr6g445140 Medicago truncatula HOM05D001817 ORTHO05D001647 2.5e-07 59.3 117 29.9
Glyma.10G186200 Glycine max HOM05D001817 ORTHO05D001647 3.2e-07 58.9 119 31.9
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 3.2e-07 58.9 114 31.6
Lj4g0004287 Lotus japonicus HOM05D001817 ORTHO05D001647 3.2e-07 58.9 119 29.4
Phvul.007G030500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 5.5e-07 58.2 118 32.2
TPR.G3595 Trifolium pratense HOM05D001817 ORTHO05D001647 7.2e-07 57.8 124 31.5
arahy.Tifrunner.gnm1.ann1.36N5BX Arachis hypogaea HOM05D001817 ORTHO05D001647 9.4e-07 57.4 126 31.7
TPR.G9069 Trifolium pratense HOM05D001817 ORTHO05D001647 9.4e-07 57.4 121 30.6
Psat0s2453g0120 Pisum sativum HOM05D001817 ORTHO05D001647 1.2e-06 57.0 106 34.0
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 1.2e-06 57.0 120 30.0
FAN20G0384 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.6e-06 56.6 122 32.0
arahy.Tifrunner.gnm1.ann1.H9XFHY Arachis hypogaea HOM05D001817 ORTHO05D001647 2.1e-06 56.2 117 27.4
arahy.Tifrunner.gnm1.ann1.QWA25E Arachis hypogaea HOM05D001817 ORTHO05D001647 2.1e-06 56.2 126 28.6
CAN.G111.7 Capsicum annuum HOM05D001817 ORTHO05D001647 2.1e-06 56.2 101 28.7
Phvul.007G030200 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.1e-06 56.2 120 30.8
ClCG05G016680 Citrullus lanatus HOM05D001817 ORTHO05D001647 2.7e-06 55.8 110 33.6
Medtr0100s0140 Medicago truncatula HOM05D001817 ORTHO05D001647 2.7e-06 55.8 120 30.0
Zm00001eb307030 Zea mays HOM05D001817 ORTHO05D001647 2.7e-06 55.8 102 36.3
Phvul.010G051700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 4.7e-06 55.1 119 31.9
TPR.G8 Trifolium pratense HOM05D001817 ORTHO05D001647 4.7e-06 55.1 83 33.7
Glyma.07G189600 Glycine max HOM05D001817 ORTHO05D001647 6.1e-06 54.7 124 33.1
Prupe.1G484200 Prunus persica HOM05D001817 ORTHO05D001647 6.1e-06 54.7 95 29.5
Sed0025130 Sechium edule HOM05D001817 ORTHO05D001647 7.9e-06 54.3 119 29.4
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 7.9e-06 54.3 117 29.9
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 7.9e-06 54.3 117 29.9
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 7.9e-06 54.3 117 29.9


User provided reference genes

Program Settings