Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.1e-107 391.7 190 100.0
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 6.3e-92 340.9 188 87.2
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 1.2e-82 310.1 188 77.7
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 3.5e-66 255.4 192 64.1
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 3.5e-66 255.4 193 61.7
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 4.6e-66 255.0 193 64.2
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 1.0e-65 253.8 194 65.5
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 2.3e-65 252.7 192 63.5
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 2.3e-65 252.7 193 63.2
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 2.3e-65 252.7 193 64.2
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 5.1e-65 251.5 191 63.4
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 5.1e-65 251.5 194 64.4
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 8.6e-65 250.8 192 63.0
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 1.1e-64 250.4 191 63.9
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.9e-64 249.6 192 62.5
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 2.5e-64 249.2 192 62.0
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 3.3e-64 248.8 192 62.5
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 4.3e-64 248.4 192 62.5
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 5.6e-64 248.1 191 61.8
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 5.6e-64 248.1 191 61.8
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 7.3e-64 247.7 192 62.0
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 7.3e-64 247.7 195 64.6
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 7.3e-64 247.7 195 64.6
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 9.6e-64 247.3 195 64.6
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 9.6e-64 247.3 191 60.2
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.6e-63 246.5 193 60.6
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 3.6e-63 245.4 192 60.4
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 4.7e-63 245.0 193 62.2
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.7e-63 245.0 195 64.1
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 4.7e-63 245.0 194 61.9
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 6.2e-63 244.6 192 62.5
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 8.1e-63 244.2 192 62.5
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 1.1e-62 243.8 192 62.5
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 1.4e-62 243.4 192 61.5
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.4e-62 242.7 196 64.3
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 2.4e-62 242.7 192 61.5
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 3.1e-62 242.3 193 60.6
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 4.0e-62 241.9 192 59.9
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 4.0e-62 241.9 194 60.3
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 5.2e-62 241.5 194 61.3
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 6.8e-62 241.1 195 61.5
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 8.9e-62 240.7 192 59.4
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.2e-61 240.4 192 59.4
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.2e-61 240.4 198 60.1
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.5e-61 240.0 194 61.3
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.5e-61 240.0 195 61.0
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.6e-61 239.2 193 63.2
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.6e-61 239.2 191 59.7
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 2.6e-61 239.2 195 60.0
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 2.6e-61 239.2 192 62.0
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 3.4e-61 238.8 194 61.9
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 4.4e-61 238.4 192 62.5
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 4.4e-61 238.4 195 60.0
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 5.8e-61 238.0 194 60.8
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 5.8e-61 238.0 196 59.7
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 7.6e-61 237.7 193 61.1
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 7.6e-61 237.7 191 59.7
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 9.9e-61 237.3 192 61.5
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 9.9e-61 237.3 195 59.5
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 1.3e-60 236.9 194 60.3
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 1.7e-60 236.5 193 59.1
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 2.2e-60 236.1 193 60.1
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 2.9e-60 235.7 194 58.2
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 3.8e-60 235.3 194 60.3
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.8e-60 235.3 192 59.9
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 6.4e-60 234.6 192 62.0
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 6.4e-60 234.6 196 58.2
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 6.4e-60 234.6 178 62.4
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 1.1e-59 233.8 193 57.0
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.1e-59 233.8 192 61.5
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.4e-59 233.4 210 57.1
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 1.4e-59 233.4 192 60.4
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.4e-59 233.4 192 59.9
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 1.4e-59 233.4 193 60.6
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.9e-59 233.0 192 56.8
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 3.2e-59 232.3 196 57.7
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 5.4e-59 231.5 193 58.5
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 7.1e-59 231.1 192 58.3
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 7.1e-59 231.1 192 57.8
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 7.1e-59 231.1 192 60.9
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 9.3e-59 230.7 178 61.8
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 1.2e-58 230.3 193 57.0
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 1.2e-58 230.3 193 57.0
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.7e-58 229.2 194 57.2
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 6.0e-58 228.0 192 58.9
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 6.0e-58 228.0 192 54.7
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 7.8e-58 227.6 178 62.4
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 7.8e-58 227.6 194 56.7
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 7.8e-58 227.6 194 58.8
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 1.0e-57 227.3 194 56.2
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 1.0e-57 227.3 194 56.2
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 1.7e-57 226.5 193 58.5
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 2.3e-57 226.1 192 59.4
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 2.3e-57 226.1 192 59.9
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 2.3e-57 226.1 194 56.2
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 6.6e-57 224.6 184 58.7
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 1.1e-56 223.8 194 55.7
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.9e-56 223.0 192 57.3
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 3.3e-56 222.2 192 59.4
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 3.3e-56 222.2 192 59.4
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 4.3e-56 221.9 192 56.8
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 7.3e-56 221.1 192 58.3
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 7.3e-56 221.1 192 56.2
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 9.6e-56 220.7 191 56.5
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.3e-55 220.3 200 56.0
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 3.6e-55 218.8 193 58.5
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 2.4e-54 216.1 194 56.7
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 4.4e-53 211.8 194 56.7
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 7.6e-53 211.1 192 52.6
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.2e-52 209.5 170 59.4
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 3.8e-52 208.8 182 57.1
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 6.4e-52 208.0 239 48.5
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 3.2e-51 205.7 183 54.1
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 2.1e-50 203.0 169 60.4
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.7e-49 199.9 195 50.3
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 1.1e-48 197.2 180 55.0
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.9e-48 196.4 180 55.0
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 2.5e-48 196.1 184 52.7
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 2.5e-48 196.1 184 52.7
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 2.5e-48 196.1 184 52.7
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 4.3e-48 195.3 170 58.2
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 5.6e-48 194.9 170 58.2
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 2.8e-47 192.6 195 48.7
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 5.3e-46 188.3 228 46.9
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 7.6e-45 184.5 193 47.7
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 3.2e-43 179.1 194 45.4
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 9.3e-43 177.6 195 51.8
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 5.6e-40 168.3 168 48.8
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.0e-38 162.2 171 52.0
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 9.0e-38 161.0 84 88.1
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 2.0e-37 159.8 136 58.8
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 2.6e-37 159.5 182 44.0
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.1e-35 154.1 99 67.7
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 9.3e-35 151.0 93 71.0
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 1.6e-31 140.2 134 52.2
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 3.1e-30 136.0 174 41.4
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 3.4e-29 132.5 210 35.7
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 5.9e-29 131.7 195 37.9
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.0e-28 131.0 170 45.9
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 4.2e-27 125.6 128 50.8
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.6e-26 123.6 139 46.0
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.3e-25 119.8 84 69.0
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 6.1e-18 95.1 140 37.9
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 2.5e-16 89.7 102 50.0
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 4.3e-16 89.0 177 29.9
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.6e-10 70.5 186 25.8
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.6e-10 69.3 91 35.2
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 1.5e-08 63.9 122 36.9
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.4e-06 57.4 66 51.5


User provided reference genes

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