Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0430900 Oryza sativa ssp. japonica HOM05D002994 ORTHO05D003337 2.5e-54 215.3 120 100.0
Carub.0001s0789 Capsella rubella HOM05D002994 ORTHO05D003337 3.6e-24 115.2 89 74.2
AT1G08530 Arabidopsis thaliana HOM05D002994 ORTHO05D003337 1.4e-23 113.2 89 71.9
AL1G18960 Arabidopsis lyrata HOM05D002994 ORTHO05D003337 1.8e-23 112.8 89 70.8
CARHR008430 Cardamine hirsuta HOM05D002994 ORTHO05D003337 3.0e-23 112.1 89 70.8
MSTRG.9226 Avicennia marina HOM05D002994 ORTHO05D003337 5.2e-23 111.3 89 73.0
Sp1g07190 Schrenkiella parvula HOM05D002994 ORTHO05D003337 6.7e-23 110.9 89 70.8
TPR.G19622 Trifolium pratense HOM05D002994 ORTHO05D003337 6.7e-23 110.9 89 70.8
FvH4_2g21680 Fragaria vesca HOM05D002994 ORTHO05D003337 3.3e-22 108.6 89 68.5
FAN24G2383 Fragaria x ananassa HOM05D002994 ORTHO05D003337 3.3e-22 108.6 89 68.5
Oeu007687.2 Olea europaea HOM05D002994 ORTHO05D003337 3.3e-22 108.6 89 70.8
FAN27G0312 Fragaria x ananassa HOM05D002994 ORTHO05D003337 4.4e-22 108.2 89 68.5
Medtr4g078130 Medicago truncatula HOM05D002994 ORTHO05D003337 4.4e-22 108.2 89 68.5
Phvul.011G018900 Phaseolus vulgaris HOM05D002994 ORTHO05D003337 4.4e-22 108.2 89 68.5
FAN15G1600 Fragaria x ananassa HOM05D002994 ORTHO05D003337 5.7e-22 107.8 89 68.5
C05p06630 Brassica napus HOM05D002994 ORTHO05D003337 7.5e-22 107.5 89 67.4
Duzib177G0745 Durio zibethinus HOM05D002994 ORTHO05D003337 9.7e-22 107.1 89 69.7
RcHm_v2.0_Chr6g0288361 Rosa chinensis HOM05D002994 ORTHO05D003337 9.7e-22 107.1 134 55.2
AUR62000658 Chenopodium quinoa HOM05D002994 ORTHO05D003337 1.7e-21 106.3 111 59.5
BcaB07g34096 Brassica carinata HOM05D002994 ORTHO05D003337 2.2e-21 105.9 89 66.3
BolC5t29423H Brassica oleracea HOM05D002994 ORTHO05D003337 2.2e-21 105.9 89 66.3
BraA06t23760Z Brassica rapa HOM05D002994 ORTHO05D003337 2.2e-21 105.9 89 66.3
Ca_18953_v3 Cicer arietinum L. HOM05D002994 ORTHO05D003337 2.2e-21 105.9 89 67.4
Lalb_Chr03g0024371 Lupinus albus HOM05D002994 ORTHO05D003337 2.8e-21 105.5 89 66.3
Migut.F02068 Erythranthe guttata HOM05D002994 ORTHO05D003337 1.1e-20 103.6 133 52.6
A06p05520 Brassica napus HOM05D002994 ORTHO05D003337 1.4e-20 103.2 89 65.2
MD10G1185200 Malus domestica HOM05D002994 ORTHO05D003337 1.4e-20 103.2 135 55.6
Gohir.D11G250500 Gossypium hirsutum HOM05D002994 ORTHO05D003337 1.8e-20 102.8 136 52.2
Gorai.007G268600 Gossypium raimondii HOM05D002994 ORTHO05D003337 1.8e-20 102.8 136 52.2
TAR633G1434 Trochodendron aralioides HOM05D002994 ORTHO05D003337 2.4e-20 102.4 89 65.2
ATR0561G058 Amborella trichopoda HOM05D002994 ORTHO05D003337 3.1e-20 102.1 89 65.2
Psat7g170080 Pisum sativum HOM05D002994 ORTHO05D003337 3.1e-20 102.1 89 64.0
Aa31sc1107G10 Aethionema arabicum HOM05D002994 ORTHO05D003337 1.2e-19 100.1 128 53.9
Prupe.8G225000 Prunus persica HOM05D002994 ORTHO05D003337 1.2e-19 100.1 111 58.6
HPP92_021426 Vanilla planifolia HOM05D002994 ORTHO05D003337 1.2e-19 100.1 89 64.0
Thhalv10008466m.g Eutrema salsugineum HOM05D002994 ORTHO05D003337 2.0e-19 99.4 89 65.2
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 5.9e-19 97.8 89 62.9
Cc09_g03220 Coffea canephora HOM05D002994 ORTHO05D003337 1.7e-18 96.3 89 61.8
Gorai.004G250100 Gossypium raimondii HOM05D002994 ORTHO05D003337 2.2e-18 95.9 89 64.0
Mapoly0132s0020 Marchantia polymorpha HOM05D002994 ORTHO05D003337 2.2e-18 95.9 86 60.5
Sabra19G0037200 Salix brachista HOM05D002994 ORTHO05D003337 6.5e-18 94.4 89 61.8
Sabra19G0039700 Salix brachista HOM05D002994 ORTHO05D003337 6.5e-18 94.4 89 61.8
THA.LOC104821131 Tarenaya hassleriana HOM05D002994 ORTHO05D003337 6.5e-18 94.4 79 68.4
Lj3g0016982 Lotus japonicus HOM05D002994 ORTHO05D003337 8.5e-18 94.0 89 61.8
CSS0027841 Camellia sinensis var. sinensis HOM05D002994 ORTHO05D003337 1.1e-17 93.6 90 61.1
CiPaw.09G139200 Carya illinoinensis HOM05D002994 ORTHO05D003337 2.5e-17 92.4 136 48.5
Glyma.11G108700 Glycine max HOM05D002994 ORTHO05D003337 2.5e-17 92.4 89 60.7
Potri.013G052700 Populus trichocarpa HOM05D002994 ORTHO05D003337 4.2e-17 91.7 89 60.7
Gohir.A08G218300 Gossypium hirsutum HOM05D002994 ORTHO05D003337 5.5e-17 91.3 136 50.0
Aqoxy2G04007 Aquilegia oxysepala HOM05D002994 ORTHO05D003337 7.2e-17 90.9 115 53.0
Cpa.g.sc51.69 Carica papaya HOM05D002994 ORTHO05D003337 7.2e-17 90.9 89 61.8
Lj2C51T6 Lonicera japonica HOM05D002994 ORTHO05D003337 1.2e-16 90.1 89 60.7
Nitab4.5_0000344g0060 Nicotiana tabacum HOM05D002994 ORTHO05D003337 1.6e-16 89.7 112 52.7
Peaxi162Scf00215g00114 Petunia axillaris HOM05D002994 ORTHO05D003337 1.6e-16 89.7 112 52.7
Potri.019G030400 Populus trichocarpa HOM05D002994 ORTHO05D003337 1.6e-16 89.7 87 60.9
PGR004G1910 Punica granatum HOM05D002994 ORTHO05D003337 1.6e-16 89.7 89 59.6
Gohir.D08G235500 Gossypium hirsutum HOM05D002994 ORTHO05D003337 2.1e-16 89.4 89 60.7
Solyc04g051120.4 Solanum lycopersicum HOM05D002994 ORTHO05D003337 2.7e-16 89.0 112 52.7
QL02p017328 Quercus lobata HOM05D002994 ORTHO05D003337 4.7e-16 88.2 89 58.4
Atru.chr2.1245 Acer truncatum HOM05D002994 ORTHO05D003337 6.1e-16 87.8 89 59.6
Hund07151 Selenicereus undatus HOM05D002994 ORTHO05D003337 6.1e-16 87.8 126 49.2
Sopen04g022430 Solanum pennellii HOM05D002994 ORTHO05D003337 6.1e-16 87.8 112 51.8
AagrBONN_evm.TU.Sc2ySwM_117.294 Anthoceros agrestis HOM05D002994 ORTHO05D003337 8.0e-16 87.4 104 52.9
CsaV3_3G022500 Cucumis sativus L. HOM05D002994 ORTHO05D003337 8.0e-16 87.4 135 48.1
PSO017G4550 Papaver somniferum HOM05D002994 ORTHO05D003337 1.0e-15 87.0 135 46.7
PSO063G0038 Papaver somniferum HOM05D002994 ORTHO05D003337 1.0e-15 87.0 135 45.2
Sc09g0001740 Simmondsia chinensis HOM05D002994 ORTHO05D003337 1.0e-15 87.0 111 52.3
Thecc.05G260600 Theobroma cacao HOM05D002994 ORTHO05D003337 1.4e-15 86.7 89 59.6
GSVIVG01026377001 Vitis vinifera HOM05D002994 ORTHO05D003337 1.4e-15 86.7 125 49.6
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 2.3e-15 85.9 89 57.3
Ciclev10021599m.g Citrus clementina HOM05D002994 ORTHO05D003337 2.3e-15 85.9 89 58.4
Eucgr.H04156 Eucalyptus grandis HOM05D002994 ORTHO05D003337 2.3e-15 85.9 89 57.3
Manes.09G144700 Manihot esculenta HOM05D002994 ORTHO05D003337 2.3e-15 85.9 89 58.4
HanXRQChr05g0139071 Helianthus annuus HOM05D002994 ORTHO05D003337 3.0e-15 85.5 89 58.4
Sed0012175 Sechium edule HOM05D002994 ORTHO05D003337 3.0e-15 85.5 111 52.3
MELO3C012902.2 Cucumis melo HOM05D002994 ORTHO05D003337 4.0e-15 85.1 135 47.4
QL05p081668 Quercus lobata HOM05D002994 ORTHO05D003337 4.0e-15 85.1 89 57.3
SEGI_02150 Sequoiadendron giganteum HOM05D002994 ORTHO05D003337 4.0e-15 85.1 89 56.2
unitig_736.g22503 Utricularia gibba HOM05D002994 ORTHO05D003337 4.0e-15 85.1 72 66.7
ECA233G1668 Erigeron canadensis HOM05D002994 ORTHO05D003337 6.8e-15 84.3 89 57.3
EL10Ac4g09801 Beta vulgaris HOM05D002994 ORTHO05D003337 8.8e-15 84.0 114 46.5
Prupe.1G354200 Prunus persica HOM05D002994 ORTHO05D003337 8.8e-15 84.0 134 47.8
TWI34G0844 Tripterygium wilfordii HOM05D002994 ORTHO05D003337 1.2e-14 83.6 89 57.3
Dinv03229 Davidia involucrata HOM05D002994 ORTHO05D003337 1.5e-14 83.2 89 56.2
CANSAT01G0680 Cannabis sativa HOM05D002994 ORTHO05D003337 2.6e-14 82.4 89 57.3
MSTRG.27426 Avicennia marina HOM05D002994 ORTHO05D003337 3.4e-14 82.0 89 55.1
Duzib128G2066 Durio zibethinus HOM05D002994 ORTHO05D003337 4.4e-14 81.6 89 57.3
VMungo1127G1567 Vigna mungo HOM05D002994 ORTHO05D003337 9.8e-14 80.5 110 50.0
Nitab4.5_0003944g0060 Nicotiana tabacum HOM05D002994 ORTHO05D003337 4.8e-13 78.2 122 46.7
vmacro11037 Vaccinium macrocarpon HOM05D002994 ORTHO05D003337 8.3e-13 77.4 90 55.6
Lsat_1_v5_gn_8_3301 Lactuca sativa HOM05D002994 ORTHO05D003337 1.1e-12 77.0 89 56.2
Gohir.A11G241100 Gossypium hirsutum HOM05D002994 ORTHO05D003337 3.1e-12 75.5 56 76.8
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 4.1e-12 75.1 83 55.4
QL06p031359 Quercus lobata HOM05D002994 ORTHO05D003337 4.1e-12 75.1 97 46.4
ClCG07G000990 Citrullus lanatus HOM05D002994 ORTHO05D003337 7.0e-12 74.3 135 43.7
Pp3c21_1120 Physcomitrium patens HOM05D002994 ORTHO05D003337 1.6e-11 73.2 106 43.4
Medtr3g094780 Medicago truncatula HOM05D002994 ORTHO05D003337 2.7e-11 72.4 118 44.1
Nitab4.5_0000818g0060 Nicotiana tabacum HOM05D002994 ORTHO05D003337 2.7e-11 72.4 77 54.5
Pp3c18_21490 Physcomitrium patens HOM05D002994 ORTHO05D003337 3.5e-11 72.0 67 56.7
Rhsim10G0151200 Rhododendron simsii HOM05D002994 ORTHO05D003337 3.5e-11 72.0 100 46.0
EL10Ac6g14747 Beta vulgaris HOM05D002994 ORTHO05D003337 4.5e-11 71.6 87 50.6
CBR_g41090 Chara braunii HOM05D002994 ORTHO05D003337 4.5e-11 71.6 104 44.2
Haze_05231 Corylus avellana HOM05D002994 ORTHO05D003337 4.5e-11 71.6 80 55.0
Actinidia29397 Actinidia chinensis HOM05D002994 ORTHO05D003337 5.9e-11 71.2 89 51.7
TPR.G23722 Trifolium pratense HOM05D002994 ORTHO05D003337 5.9e-11 71.2 90 47.8
TAR381G0007 Trochodendron aralioides HOM05D002994 ORTHO05D003337 5.9e-11 71.2 84 51.2
vmacro12907 Vaccinium macrocarpon HOM05D002994 ORTHO05D003337 5.9e-11 71.2 97 44.3
COL.COLO4_20548 Corchorus olitorius HOM05D002861 ORTHO05D003104 1.3e-10 70.1 118 43.2
Nitab4.5_0004246g0050 Nicotiana tabacum HOM05D002994 ORTHO05D003337 1.3e-10 70.1 76 53.9
Pp3c19_6090 Physcomitrium patens HOM05D002994 ORTHO05D003337 1.3e-10 70.1 106 42.5
PGR004G2214 Punica granatum HOM05D002994 ORTHO05D003337 1.3e-10 70.1 64 59.4
TWI74G0568 Tripterygium wilfordii HOM05D002994 ORTHO05D003337 1.7e-10 69.7 99 45.5
Lj1g0020979 Lotus japonicus HOM05D002994 ORTHO05D003337 2.9e-10 68.9 64 59.4
Lalb_Chr08g0238901 Lupinus albus HOM05D002994 ORTHO05D003337 2.9e-10 68.9 83 50.6
Aa31LG3G17140 Aethionema arabicum HOM05D002994 ORTHO05D003337 3.8e-10 68.6 97 42.3
Eucgr.I00329 Eucalyptus grandis HOM05D002994 ORTHO05D003337 3.8e-10 68.6 106 44.3
Peaxi162Scf00167g00017 Petunia axillaris HOM05D002994 ORTHO05D003337 3.8e-10 68.6 77 50.6
AUR62003311 Chenopodium quinoa HOM05D002994 ORTHO05D003337 5.0e-10 68.2 97 43.3
Glyma.06G146000 Glycine max HOM05D002994 ORTHO05D003337 5.0e-10 68.2 67 55.2
VMungo1309G0566 Vigna mungo HOM05D002994 ORTHO05D003337 5.0e-10 68.2 67 55.2
CDE05G2567 Ceratophyllum demersum HOM05D002994 ORTHO05D003337 6.6e-10 67.8 58 62.1
Duzib147G1014 Durio zibethinus HOM05D002994 ORTHO05D003337 6.6e-10 67.8 79 49.4
Thhalv10014442m.g Eutrema salsugineum HOM05D002994 ORTHO05D003337 6.6e-10 67.8 93 44.1
Solyc05g051770.3 Solanum lycopersicum HOM05D002994 ORTHO05D003337 6.6e-10 67.8 77 53.2
AL6G20440 Arabidopsis lyrata HOM05D002994 ORTHO05D003337 8.6e-10 67.4 95 43.2
CARHR203320 Cardamine hirsuta HOM05D002994 ORTHO05D003337 8.6e-10 67.4 67 56.7
Cc07_g14910 Coffea canephora HOM05D002994 ORTHO05D003337 8.6e-10 67.4 58 62.1
Cc07_g16080 Coffea canephora HOM05D002994 ORTHO05D003337 8.6e-10 67.4 97 41.2
Nn1g07964 Nelumbo nucifera HOM05D002994 ORTHO05D003337 8.6e-10 67.4 89 48.3
Sopen05g030240 Solanum pennellii HOM05D002994 ORTHO05D003337 8.6e-10 67.4 66 57.6
PGSC0003DMG400030098 Solanum tuberosum HOM05D002994 ORTHO05D003337 8.6e-10 67.4 66 57.6
Ca_16890_v3 Cicer arietinum L. HOM05D002994 ORTHO05D003337 1.1e-09 67.0 70 52.9
CsaV3_6G042440 Cucumis sativus L. HOM05D002994 ORTHO05D003337 1.1e-09 67.0 81 48.1
DCAR_011447 Daucus carota HOM05D002994 ORTHO05D003337 1.1e-09 67.0 81 50.6
THA.LOC104818479 Tarenaya hassleriana HOM05D002994 ORTHO05D003337 1.1e-09 67.0 104 44.2
AT5G09995 Arabidopsis thaliana HOM05D002994 ORTHO05D003337 1.5e-09 66.6 70 52.9
Carub.0006s0845 Capsella rubella HOM05D002994 ORTHO05D003337 1.5e-09 66.6 70 52.9
HPP92_027146 Vanilla planifolia HOM05D002994 ORTHO05D003337 1.5e-09 66.6 70 52.9
Sc16g0004180 Simmondsia chinensis HOM05D002994 ORTHO05D003337 2.5e-09 65.9 105 42.9
HPP92_016463 Vanilla planifolia HOM05D002994 ORTHO05D003337 2.5e-09 65.9 81 50.6
Sp6g33410 Schrenkiella parvula HOM05D002994 ORTHO05D003337 3.3e-09 65.5 93 44.1
PGSC0003DMG402023121 Solanum tuberosum HOM05D002994 ORTHO05D003337 4.2e-09 65.1 43 83.7
unitig_899.g14601 Utricularia gibba HOM05D002994 ORTHO05D003337 4.2e-09 65.1 71 56.3
Actinidia12207 Actinidia chinensis HOM05D002994 ORTHO05D003337 5.5e-09 64.7 86 48.8
BolC9t59518H Brassica oleracea HOM05D002994 ORTHO05D003337 5.5e-09 64.7 64 56.2
Eucgr.L02757 Eucalyptus grandis HOM05D002994 ORTHO05D003337 5.5e-09 64.7 81 49.4
TPR.G127 Trifolium pratense HOM05D002994 ORTHO05D003337 5.5e-09 64.7 80 45.0
A10p27500 Brassica napus HOM05D002994 ORTHO05D003337 7.2e-09 64.3 97 41.2
BraA10t44802Z Brassica rapa HOM05D002994 ORTHO05D003337 7.2e-09 64.3 97 41.2
C09p67570 Brassica napus HOM05D002994 ORTHO05D003337 1.2e-08 63.5 97 40.2
Cfa021165 Carpinus fangiana HOM05D002994 ORTHO05D003337 1.2e-08 63.5 43 81.4
Phvul.009G140000 Phaseolus vulgaris HOM05D002994 ORTHO05D003337 3.6e-08 62.0 100 45.0
SalBow1G2572 Salvia bowleyana HOM05D002994 ORTHO05D003337 3.6e-08 62.0 75 54.7
Rhsim02G0173800 Rhododendron simsii HOM05D002994 ORTHO05D003337 6.1e-08 61.2 43 79.1
AUR62016272 Chenopodium quinoa HOM05D002994 ORTHO05D003337 8.0e-08 60.8 97 39.2
PSO210G0972 Papaver somniferum HOM05D002994 ORTHO05D003337 1.8e-07 59.7 87 44.8
PSO447G0304 Papaver somniferum HOM05D002994 ORTHO05D003337 1.8e-07 59.7 87 44.8
Thecc.01G112000 Theobroma cacao HOM05D002994 ORTHO05D003337 2.3e-07 59.3 64 54.7
Eucgr.H04542 Eucalyptus grandis HOM05D002994 ORTHO05D003337 3.0e-07 58.9 117 41.9
Dinv42701 Davidia involucrata HOM05D002994 ORTHO05D003337 4.0e-07 58.5 70 50.0
TPR.G18568 Trifolium pratense HOM05D002994 ORTHO05D003337 4.0e-07 58.5 52 59.6
Aqoxy6G00491 Aquilegia oxysepala HOM05D002994 ORTHO05D003337 6.8e-07 57.8 87 44.8
ClCG01G016170 Citrullus lanatus HOM05D002994 ORTHO05D003337 8.9e-07 57.4 81 43.2
Mapoly0067s0012 Marchantia polymorpha HOM05D002994 ORTHO05D003337 8.9e-07 57.4 67 50.7
Actinidia28891 Actinidia chinensis HOM05D002994 ORTHO05D003337 1.2e-06 57.0 38 78.9
CiPaw.03G134800 Carya illinoinensis HOM05D002994 ORTHO05D003337 2.0e-06 56.2 97 37.1
Gohir.A02G134700 Gossypium hirsutum HOM05D002994 ORTHO05D003337 2.0e-06 56.2 79 41.8
FAN19G1893 Fragaria x ananassa HOM05D002994 ORTHO05D003337 4.4e-06 55.1 80 40.0
FAN23G1765 Fragaria x ananassa HOM05D002994 ORTHO05D003337 4.4e-06 55.1 80 41.2
AagrBONN_evm.TU.Sc2ySwM_368.1660 Anthoceros agrestis HOM05D002994 ORTHO05D003337 5.7e-06 54.7 110 37.3
Cpa.g.sc196.5 Carica papaya HOM05D002994 ORTHO05D003337 5.7e-06 54.7 71 46.5
COL.COLO4_11018 Corchorus olitorius HOM05D002994 ORTHO05D003337 5.7e-06 54.7 97 38.1
MBI05_g36589_MAGBIO Magnolia biondii HOM05D002994 ORTHO05D003337 5.7e-06 54.7 87 39.1
RcHm_v2.0_Chr2g0116241 Rosa chinensis HOM05D002994 ORTHO05D003337 5.7e-06 54.7 71 45.1
Cfa002747 Carpinus fangiana HOM05D002994 ORTHO05D003337 7.5e-06 54.3 97 36.1
HanXRQChr09g0254781 Helianthus annuus HOM05D002994 ORTHO05D003337 7.5e-06 54.3 100 39.0
Migut.H02426 Erythranthe guttata HOM05D002994 ORTHO05D003337 9.8e-06 53.9 70 45.7
Nn5g28921 Nelumbo nucifera HOM05D002994 ORTHO05D003337 9.8e-06 53.9 75 44.0


User provided reference genes

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