Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 8.1e-296 1019.6 499 100.0
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 4.1e-122 442.6 266 74.8
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.7e-115 419.5 362 58.0
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 4.8e-115 419.1 457 50.1
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 5.3e-114 415.6 450 48.7
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 5.9e-113 412.1 443 50.3
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.0e-112 411.4 451 47.9
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.7e-112 410.6 460 49.1
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 1.5e-111 407.5 461 48.4
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 3.2e-111 406.4 459 48.4
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 4.2e-111 406.0 367 56.1
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 1.2e-110 404.4 475 46.5
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 4.7e-110 402.5 438 48.6
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 6.1e-110 402.1 438 48.2
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 8.0e-110 401.7 447 49.0
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 8.0e-110 401.7 464 45.9
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.8e-109 400.6 482 46.3
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 2.3e-109 400.2 490 45.1
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 3.0e-109 399.8 268 66.8
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 3.0e-109 399.8 452 48.2
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 4.0e-109 399.4 411 51.1
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 4.0e-109 399.4 515 44.7
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 4.0e-109 399.4 268 66.8
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 8.8e-109 398.3 443 49.4
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.1e-108 397.9 452 47.6
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 1.1e-108 397.9 415 50.4
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.0e-108 397.1 483 45.3
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 2.8e-107 393.3 470 47.0
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 3.7e-107 392.9 474 46.0
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 6.3e-107 392.1 474 46.2
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 8.2e-107 391.7 477 45.3
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 1.1e-106 391.3 468 46.8
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 1.1e-106 391.3 478 45.4
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 3.1e-106 389.8 442 47.5
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 4.1e-106 389.4 442 49.1
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 5.3e-106 389.0 465 46.5
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 7.0e-106 388.7 430 48.6
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 1.6e-105 387.5 366 53.8
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 2.6e-105 386.7 483 44.5
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 7.7e-105 385.2 271 64.9
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 7.7e-105 385.2 416 45.9
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.3e-104 384.4 361 53.7
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 2.9e-104 383.3 436 46.1
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 3.8e-104 382.9 450 47.3
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 8.5e-104 381.7 271 63.1
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 1.1e-103 381.3 442 47.5
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.5e-103 380.9 274 62.8
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 1.5e-103 380.9 459 45.5
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 1.5e-103 380.9 506 42.7
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 1.5e-103 380.9 381 52.8
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.5e-103 380.2 267 64.4
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 3.2e-103 379.8 366 53.3
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 5.5e-103 379.0 481 42.8
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 1.6e-102 377.5 442 47.1
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 3.6e-102 376.3 446 47.3
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 3.6e-102 376.3 450 46.9
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 6.1e-102 375.6 454 46.5
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 6.1e-102 375.6 317 55.8
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 8.0e-102 375.2 450 47.1
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 8.0e-102 375.2 427 47.8
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 1.0e-101 374.8 365 53.4
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.8e-101 374.0 484 45.0
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 4.0e-101 372.9 364 53.3
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 4.0e-101 372.9 483 44.5
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 4.0e-101 372.9 484 45.0
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 4.0e-101 372.9 268 63.4
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 8.8e-101 371.7 458 45.6
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 8.8e-101 371.7 489 42.9
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 1.2e-100 371.3 266 63.2
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.5e-100 370.9 444 47.1
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.0e-100 370.5 261 64.0
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 2.0e-100 370.5 358 52.2
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 2.6e-100 370.2 300 57.3
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 7.5e-100 368.6 442 47.7
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 7.5e-100 368.6 360 53.3
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 7.5e-100 368.6 462 45.0
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 9.8e-100 368.2 360 51.9
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.7e-99 367.5 440 47.3
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 1.7e-99 367.5 452 45.8
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 3.7e-99 366.3 449 45.0
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 4.8e-99 365.9 443 47.2
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 4.1e-98 362.8 361 51.8
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 5.4e-98 362.5 289 58.5
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 1.6e-97 360.9 452 46.2
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 2.0e-97 360.5 434 47.2
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 3.5e-97 359.8 299 57.9
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 4.5e-97 359.4 441 45.1
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 1.0e-96 358.2 296 58.8
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 2.9e-96 356.7 503 42.3
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 5.0e-96 355.9 375 49.3
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 1.9e-95 354.0 434 44.5
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 4.2e-95 352.8 290 57.6
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 9.4e-95 351.7 315 54.9
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 2.1e-94 350.5 271 60.5
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 8.0e-94 348.6 327 54.4
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 2.3e-93 347.1 264 58.7
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 3.7e-91 339.7 285 56.1
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 2.4e-90 337.0 281 58.4
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 9.1e-90 335.1 310 51.6
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 7.7e-89 332.0 504 36.9
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 5.6e-87 325.9 278 53.6
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 6.8e-85 318.9 268 56.3
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 6.8e-85 318.9 189 76.2
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 1.2e-84 318.2 263 57.4
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 7.0e-82 308.9 407 44.0
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 2.3e-80 303.9 247 57.1
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.1e-79 301.6 278 52.2
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 3.3e-79 300.1 323 48.3
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 9.5e-79 298.5 230 59.6
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 3.6e-78 296.6 266 53.8
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 2.0e-76 290.8 287 52.3
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 5.4e-74 282.7 194 65.5
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 7.0e-74 282.3 342 45.9
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 4.9e-67 259.6 173 69.4
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.4e-66 257.3 272 47.1
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.9e-63 247.7 270 46.7
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.4e-52 210.3 220 46.4
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.8e-51 206.8 277 42.2
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 2.4e-50 204.1 270 41.5
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 2.4e-50 204.1 139 64.0
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 3.0e-48 197.2 174 56.3
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.4e-45 188.3 277 39.4
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 3.1e-45 187.2 133 66.2
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.3e-43 181.8 321 35.8
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.9e-42 177.9 290 36.6
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 5.4e-42 176.4 315 35.2
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.7e-41 174.1 253 40.3
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 1.8e-37 161.4 97 74.2
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 5.5e-34 149.8 136 50.7
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.4e-29 134.4 342 28.9
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 1.2e-28 132.1 94 60.6
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.5e-28 131.7 153 43.8
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 9.3e-26 122.5 119 50.4
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.2e-25 122.1 365 29.6
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 3.9e-24 117.1 155 42.6
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.6e-22 111.7 170 41.2
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 3.1e-21 107.5 78 62.8
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 3.8e-19 100.5 258 33.3
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 5.0e-19 100.1 244 30.3
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 9.4e-10 69.3 102 37.3
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 1.4e-08 65.5 65 47.7
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 3.3e-07 60.8 63 44.4
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 1.3e-06 58.9 63 44.4
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 2.2e-06 58.2 246 28.9


User provided reference genes

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