Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0276100 Oryza sativa ssp. japonica HOM05D007485 ORTHO05D009437 1.4e-76 289.7 164 100.0
Zm00001eb317800 Zea mays HOM05D007485 ORTHO05D009437 2.0e-38 162.9 167 63.5
Zm00001eb102490 Zea mays HOM05D007485 ORTHO05D009437 2.5e-36 156.0 116 75.0
Nn1g03123 Nelumbo nucifera HOM05D007485 ORTHO05D009437 4.9e-32 141.7 144 56.9
Actinidia37576 Actinidia chinensis HOM05D007485 ORTHO05D009437 6.4e-32 141.4 113 64.6
GSVIVG01028546001 Vitis vinifera HOM05D007485 ORTHO05D009437 1.9e-31 139.8 121 62.8
Gohir.A07G201700 Gossypium hirsutum HOM05D007485 ORTHO05D009437 4.1e-31 138.7 116 62.9
Thecc.01G230100 Theobroma cacao HOM05D007485 ORTHO05D009437 7.0e-31 137.9 116 61.2
TWI59G0176 Tripterygium wilfordii HOM05D007485 ORTHO05D009437 9.2e-31 137.5 110 64.5
Gohir.D07G208000 Gossypium hirsutum HOM05D007485 ORTHO05D009437 1.2e-30 137.1 116 62.1
Cc01_g17350 Coffea canephora HOM05D007485 ORTHO05D009437 1.6e-30 136.7 110 66.4
Lalb_Chr19g0125461 Lupinus albus HOM05D007485 ORTHO05D009437 2.1e-30 136.3 123 62.6
Potri.002G251800 Populus trichocarpa HOM05D007485 ORTHO05D009437 3.5e-30 135.6 121 60.3
Glyma.18G175800 Glycine max HOM05D007485 ORTHO05D009437 7.8e-30 134.4 123 60.2
MD10G1169600 Malus domestica HOM05D007485 ORTHO05D009437 1.0e-29 134.0 117 63.2
Rhsim13G0042600 Rhododendron simsii HOM05D007485 ORTHO05D009437 1.7e-29 133.3 113 63.7
VMungo1383G3371 Vigna mungo HOM05D007485 ORTHO05D009437 1.7e-29 133.3 123 59.3
Duzib133G1001 Durio zibethinus HOM05D007485 ORTHO05D009437 3.9e-29 132.1 116 61.2
MD05G1180900 Malus domestica HOM05D007485 ORTHO05D009437 3.9e-29 132.1 117 62.4
Prupe.8G207500 Prunus persica HOM05D007485 ORTHO05D009437 5.0e-29 131.7 117 61.5
Manes.12G043200 Manihot esculenta HOM05D007485 ORTHO05D009437 1.1e-28 130.6 179 51.4
Phvul.008G122300 Phaseolus vulgaris HOM05D007485 ORTHO05D009437 1.1e-28 130.6 123 58.5
FAN24G1628 Fragaria x ananassa HOM05D007485 ORTHO05D009437 1.5e-28 130.2 132 57.6
MSTRG.18375 Avicennia marina HOM05D007485 ORTHO05D009437 1.9e-28 129.8 111 59.5
Haze_24766 Corylus avellana HOM05D007485 ORTHO05D009437 1.9e-28 129.8 117 59.0
Migut.D00513 Erythranthe guttata HOM05D007485 ORTHO05D009437 1.9e-28 129.8 119 58.8
FvH4_2g19580 Fragaria vesca HOM05D007485 ORTHO05D009437 1.9e-28 129.8 132 56.8
Glyma.08G357300 Glycine max HOM05D007485 ORTHO05D009437 1.9e-28 129.8 123 57.7
arahy.Tifrunner.gnm1.ann1.9XF3L6 Arachis hypogaea HOM05D007485 ORTHO05D009437 4.3e-28 128.6 129 58.9
RcHm_v2.0_Chr6g0285341 Rosa chinensis HOM05D007485 ORTHO05D009437 4.3e-28 128.6 126 57.9
Solyc06g007990.4 Solanum lycopersicum HOM05D007485 ORTHO05D009437 4.3e-28 128.6 111 59.5
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 5.6e-28 128.3 113 60.2
Atru.chr5.1880 Acer truncatum HOM05D007485 ORTHO05D009437 9.5e-28 127.5 131 56.5
Ciclev10022604m.g Citrus clementina HOM05D007485 ORTHO05D009437 9.5e-28 127.5 124 59.7
FAN27G2610 Fragaria x ananassa HOM05D007485 ORTHO05D009437 9.5e-28 127.5 132 56.1
Lj1g0002217 Lotus japonicus HOM05D007485 ORTHO05D009437 1.2e-27 127.1 124 56.5
CsaV3_3G028690 Cucumis sativus L. HOM05D007485 ORTHO05D009437 1.6e-27 126.7 115 61.7
FAN15G2643 Fragaria x ananassa HOM05D007485 ORTHO05D009437 2.1e-27 126.3 117 59.8
Gorai.001G234600 Gossypium raimondii HOM05D007485 ORTHO05D009437 2.8e-27 125.9 115 58.3
THA.LOC104808772 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 2.8e-27 125.9 138 52.9
Peaxi162Scf00499g00019 Petunia axillaris HOM05D007485 ORTHO05D009437 3.6e-27 125.6 114 60.5
PGR083G2217 Punica granatum HOM05D007485 ORTHO05D009437 3.6e-27 125.6 127 55.9
MELO3C012792.2 Cucumis melo HOM05D007485 ORTHO05D009437 4.7e-27 125.2 117 59.8
AL9U10750 Arabidopsis lyrata HOM05D007485 ORTHO05D009437 6.2e-27 124.8 132 51.5
Aqoxy2G03844 Aquilegia oxysepala HOM05D007485 ORTHO05D009437 1.1e-26 124.0 121 58.7
vmacro02738 Vaccinium macrocarpon HOM05D007485 ORTHO05D009437 2.3e-26 122.9 105 63.8
CSS0034782 Camellia sinensis var. sinensis HOM05D007485 ORTHO05D009437 3.1e-26 122.5 113 59.3
MBI10_g09190_MAGBIO Magnolia biondii HOM05D007485 ORTHO05D009437 3.1e-26 122.5 130 54.6
SGA_v2.0_scaffold1G00709 Striga asiatica HOM05D007485 ORTHO05D009437 3.1e-26 122.5 122 54.9
EL10Ac7g17803 Beta vulgaris HOM05D007485 ORTHO05D009437 5.2e-26 121.7 111 55.0
AT4G13220 Arabidopsis thaliana HOM05D007485 ORTHO05D009437 6.8e-26 121.3 177 43.5
Sopen06g002830 Solanum pennellii HOM05D007485 ORTHO05D009437 6.8e-26 121.3 159 46.5
HPP92_025808 Vanilla planifolia HOM05D007485 ORTHO05D009437 6.8e-26 121.3 116 57.8
CANSAT01G1289 Cannabis sativa HOM05D007485 ORTHO05D009437 8.9e-26 120.9 119 54.6
PGSC0003DMG400014703 Solanum tuberosum HOM05D007485 ORTHO05D009437 1.2e-25 120.6 131 51.1
Medtr7g059255 Medicago truncatula HOM05D007485 ORTHO05D009437 1.5e-25 120.2 153 45.8
Aa31LG9G4570 Aethionema arabicum HOM05D007485 ORTHO05D009437 2.6e-25 119.4 132 50.0
Carub.0007s2945 Capsella rubella HOM05D007485 ORTHO05D009437 2.6e-25 119.4 177 43.5
CAN.G322.118 Capsicum annuum HOM05D007485 ORTHO05D009437 4.4e-25 118.6 114 54.4
TPR.G9157 Trifolium pratense HOM05D007485 ORTHO05D009437 5.8e-25 118.2 103 60.2
Nitab4.5_0001740g0030 Nicotiana tabacum HOM05D007485 ORTHO05D009437 7.5e-25 117.9 102 60.8
Sc05g0002340 Simmondsia chinensis HOM05D007485 ORTHO05D009437 1.3e-24 117.1 110 50.9
CiPaw.03G152400 Carya illinoinensis HOM05D007485 ORTHO05D009437 1.7e-24 116.7 121 55.4
ECA247G1773 Erigeron canadensis HOM05D007485 ORTHO05D009437 1.7e-24 116.7 115 58.3
Eucgr.C02436 Eucalyptus grandis HOM05D007485 ORTHO05D009437 2.2e-24 116.3 189 47.6
BcaB03g13243 Brassica carinata HOM05D007485 ORTHO05D009437 2.9e-24 115.9 142 51.4
arahy.Tifrunner.gnm1.ann1.W4TMFE Arachis hypogaea HOM05D007485 ORTHO05D009437 3.7e-24 115.5 105 62.9
C08p14780 Brassica napus HOM05D007485 ORTHO05D009437 3.7e-24 115.5 119 52.9
BraA08t35252Z Brassica rapa HOM05D007485 ORTHO05D009437 3.7e-24 115.5 142 48.6
PSO017G5507 Papaver somniferum HOM05D007485 ORTHO05D009437 4.9e-24 115.2 115 58.3
A08p33350 Brassica napus HOM05D007485 ORTHO05D009437 8.3e-24 114.4 143 49.7
AUR62008887 Chenopodium quinoa HOM05D007485 ORTHO05D009437 8.3e-24 114.4 129 48.1
SalBow6G3754 Salvia bowleyana HOM05D007485 ORTHO05D009437 8.3e-24 114.4 112 54.5
BcaC07g38678 Brassica carinata HOM05D007485 ORTHO05D009437 1.1e-23 114.0 142 48.6
BolC8t49113H Brassica oleracea HOM05D007485 ORTHO05D009437 1.1e-23 114.0 142 48.6
Thhalv10026377m.g Eutrema salsugineum HOM05D007485 ORTHO05D009437 1.1e-23 114.0 177 43.5
CARHR126310 Cardamine hirsuta HOM05D007485 ORTHO05D009437 2.4e-23 112.8 132 47.7
HanXRQChr15g0468381 Helianthus annuus HOM05D007485 ORTHO05D009437 2.4e-23 112.8 137 51.8
CDE12G0678 Ceratophyllum demersum HOM05D007485 ORTHO05D009437 3.2e-23 112.5 120 55.0
CARHR218700 Cardamine hirsuta HOM05D007485 ORTHO05D009437 1.6e-22 110.2 181 40.9
Lsat_1_v5_gn_9_12821 Lactuca sativa HOM05D007485 ORTHO05D009437 3.5e-22 109.0 129 51.2
Sp7g10710 Schrenkiella parvula HOM05D007485 ORTHO05D009437 3.5e-22 109.0 177 42.4
unitig_0.g180 Utricularia gibba HOM05D007485 ORTHO05D009437 3.0e-21 105.9 129 48.1
AUR62031821 Chenopodium quinoa HOM05D007485 ORTHO05D009437 5.1e-21 105.1 143 42.0
PSO063G7151 Papaver somniferum HOM05D007485 ORTHO05D009437 1.9e-20 103.2 114 53.5
Sed0027911 Sechium edule HOM05D007485 ORTHO05D009437 2.4e-18 96.3 157 41.4
QL09p044412 Quercus lobata HOM05D007485 ORTHO05D009437 4.4e-17 92.0 67 68.7
COL.COLO4_36853 Corchorus olitorius HOM05D007485 ORTHO05D009437 3.5e-14 82.4 74 56.8
QL09p045086 Quercus lobata HOM05D007485 ORTHO05D009437 3.0e-13 79.3 56 71.4
ATR0088G060 Amborella trichopoda HOM05D007485 ORTHO05D009437 1.5e-12 77.0 56 66.1
Psat0s3317g0040 Pisum sativum HOM05D007485 ORTHO05D009437 4.3e-12 75.5 81 49.4
Pp3c25_600 Physcomitrium patens HOM05D007485 ORTHO05D009437 3.6e-11 72.4 135 37.0
CBR_g11056 Chara braunii HOM05D007485 ORTHO05D009437 6.4e-08 61.6 159 32.7
HanXRQChr12g0377041 Helianthus annuus HOM05D007485 ORTHO05D009437 8.4e-08 61.2 55 54.5
Mapoly0101s0026 Marchantia polymorpha HOM05D007485 ORTHO05D009437 4.6e-06 55.5 80 43.8


User provided reference genes

Program Settings