Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 5.4e-66 254.2 131 100.0
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 2.3e-48 195.7 131 78.6
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 1.1e-39 166.8 133 63.2
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 5.6e-39 164.5 132 67.4
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 5.6e-39 164.5 134 65.7
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 5.6e-39 164.5 125 68.8
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 9.6e-39 163.7 129 68.2
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.6e-39 163.7 129 68.2
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.6e-39 163.7 129 68.2
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 9.6e-39 163.7 132 67.4
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 1.3e-38 163.3 134 67.2
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.3e-38 163.3 129 68.2
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.3e-38 163.3 129 68.2
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.3e-38 163.3 129 68.2
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 2.8e-38 162.2 133 66.2
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.8e-38 162.2 129 67.4
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 2.8e-38 162.2 133 63.9
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 3.6e-38 161.8 132 68.2
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 4.8e-38 161.4 132 66.7
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 8.1e-38 160.6 133 66.2
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 1.1e-37 160.2 134 65.7
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 1.1e-37 160.2 132 67.4
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 1.1e-37 160.2 124 70.2
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 1.4e-37 159.8 132 67.4
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 1.4e-37 159.8 131 68.7
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 1.4e-37 159.8 133 67.7
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 1.4e-37 159.8 133 69.2
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.4e-37 159.1 133 62.4
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 3.1e-37 158.7 105 77.1
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 5.3e-37 157.9 134 65.7
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 5.3e-37 157.9 133 66.2
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 6.9e-37 157.5 134 67.2
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 6.9e-37 157.5 133 63.2
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.2e-36 156.8 121 70.2
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 1.2e-36 156.8 134 66.4
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 1.2e-36 156.8 132 65.9
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 1.2e-36 156.8 132 64.4
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 1.5e-36 156.4 133 66.2
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 2.0e-36 156.0 134 64.2
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 2.0e-36 156.0 133 63.9
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.0e-36 156.0 134 64.2
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 2.0e-36 156.0 133 64.7
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 2.0e-36 156.0 133 60.9
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 2.6e-36 155.6 133 63.9
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 2.6e-36 155.6 108 73.1
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 3.4e-36 155.2 118 67.8
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.4e-36 154.8 134 64.2
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 4.4e-36 154.8 134 65.7
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 7.6e-36 154.1 108 74.1
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 7.6e-36 154.1 133 59.4
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 9.9e-36 153.7 133 64.7
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.3e-35 153.3 133 66.9
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 1.3e-35 153.3 132 63.6
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 1.3e-35 153.3 133 62.4
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 1.7e-35 152.9 135 60.0
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 1.7e-35 152.9 133 60.2
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 2.2e-35 152.5 133 62.4
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 2.2e-35 152.5 115 70.4
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 2.9e-35 152.1 127 63.0
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 2.9e-35 152.1 133 62.4
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 3.8e-35 151.8 134 64.9
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.8e-35 151.8 134 64.9
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 4.9e-35 151.4 133 61.7
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 4.9e-35 151.4 108 73.1
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 4.9e-35 151.4 133 58.6
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 6.4e-35 151.0 133 62.4
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 6.4e-35 151.0 133 62.4
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 1.1e-34 150.2 133 63.2
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 1.1e-34 150.2 127 60.6
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 1.1e-34 150.2 133 61.7
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 1.1e-34 150.2 133 61.7
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 1.4e-34 149.8 133 61.7
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 1.4e-34 149.8 134 61.9
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 1.4e-34 149.8 124 66.1
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 2.4e-34 149.1 119 67.2
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 2.4e-34 149.1 133 63.2
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 2.4e-34 149.1 129 62.0
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 3.2e-34 148.7 133 61.7
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 4.2e-34 148.3 133 63.2
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 5.4e-34 147.9 118 67.8
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 7.1e-34 147.5 135 61.5
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 7.1e-34 147.5 130 60.8
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 9.3e-34 147.1 131 61.1
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 9.3e-34 147.1 119 68.1
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 1.6e-33 146.4 131 58.8
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 1.6e-33 146.4 106 71.7
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 2.1e-33 146.0 133 62.4
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 2.1e-33 146.0 133 62.4
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 2.1e-33 146.0 133 63.2
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 4.6e-33 144.8 122 63.9
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 4.6e-33 144.8 134 60.4
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 6.0e-33 144.4 134 59.0
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 7.9e-33 144.1 121 64.5
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 7.9e-33 144.1 121 64.5
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 7.9e-33 144.1 121 64.5
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 7.9e-33 144.1 121 64.5
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 7.9e-33 144.1 91 75.8
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 1.0e-32 143.7 114 64.9
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 1.0e-32 143.7 134 57.5
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.3e-32 142.5 133 60.9
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.3e-32 142.5 133 60.9
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 5.1e-32 141.4 114 68.4
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 6.6e-32 141.0 111 68.5
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 8.7e-32 140.6 101 69.3
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 1.9e-31 139.4 132 59.8
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 2.5e-31 139.0 120 63.3
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 4.3e-31 138.3 133 56.4
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 4.3e-31 138.3 133 53.4
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 9.6e-31 137.1 115 65.2
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 9.6e-31 137.1 123 59.3
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.3e-30 136.7 119 63.9
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.1e-30 136.0 92 71.7
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 2.1e-30 136.0 133 59.4
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 2.1e-30 136.0 119 63.0
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 3.6e-30 135.2 132 59.8
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 8.1e-30 134.0 92 69.6
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 6.9e-29 131.0 92 68.5
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 1.2e-28 130.2 104 61.5
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.6e-28 127.5 119 58.8
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 2.9e-27 125.6 100 65.0
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 6.4e-27 124.4 108 61.1
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 8.4e-27 124.0 119 58.0
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 1.9e-26 122.9 106 59.4
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 5.5e-26 121.3 127 54.3
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 6.7e-24 114.4 91 62.6
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 3.7e-22 108.6 116 55.2
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 8.1e-22 107.5 104 54.8
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 4.5e-20 101.7 93 63.4
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.8e-20 101.3 57 84.2
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 5.8e-20 101.3 104 51.9
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 1.1e-18 97.1 114 48.2
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 4.2e-18 95.1 92 53.3
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 9.3e-18 94.0 90 52.2
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.8e-13 79.7 52 69.2
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 2.5e-10 69.3 99 41.4
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 7.2e-10 67.8 120 39.2
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.7e-09 65.9 55 60.0
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 1.6e-06 56.6 69 53.6
PRCOL_00001894 Prasinoderma coloniale HOM05D005499 ORTHO05D006666 2.2e-06 56.2 70 40.0


User provided reference genes

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