Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 8.0e-103 377.1 190 100.0
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 5.0e-81 304.7 188 78.2
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 8.3e-76 287.3 186 75.8
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 3.0e-73 278.9 185 71.4
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 5.1e-73 278.1 186 71.5
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 5.1e-73 278.1 186 71.5
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.5e-72 276.6 182 73.6
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.5e-72 276.6 182 73.6
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 1.5e-72 276.6 182 73.6
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.5e-72 276.6 182 74.7
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.9e-72 276.2 182 73.1
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 1.9e-72 276.2 182 72.5
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 3.3e-72 275.4 182 74.2
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 7.3e-72 274.2 183 71.0
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 9.5e-72 273.9 182 73.1
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 2.8e-71 272.3 182 71.4
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 6.2e-71 271.2 176 73.9
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.1e-70 270.4 182 71.4
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.4e-70 270.0 182 71.4
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 3.1e-70 268.9 202 67.3
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 3.1e-70 268.9 182 72.0
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.0e-70 268.5 191 68.6
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 6.8e-70 267.7 184 69.6
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 6.8e-70 267.7 182 69.2
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 8.9e-70 267.3 182 69.2
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.2e-69 266.9 182 70.3
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 1.2e-69 266.9 182 69.2
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 1.2e-69 266.9 182 69.2
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 1.2e-69 266.9 182 69.2
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 2.0e-69 266.2 190 67.4
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 2.6e-69 265.8 188 68.6
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 3.4e-69 265.4 188 68.1
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 3.4e-69 265.4 182 70.3
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 5.8e-69 264.6 182 70.3
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 5.8e-69 264.6 182 70.3
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 7.6e-69 264.2 182 68.7
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.3e-68 263.5 175 72.0
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.3e-68 263.5 182 69.2
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 2.2e-68 262.7 182 69.2
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 4.9e-68 261.5 182 69.2
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 4.9e-68 261.5 175 72.6
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 1.1e-67 260.4 179 72.1
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 1.9e-67 259.6 188 66.0
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.9e-67 259.6 185 64.9
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 1.9e-67 259.6 174 74.1
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 1.9e-67 259.6 182 68.7
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 3.2e-67 258.8 182 68.7
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 3.2e-67 258.8 178 70.2
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 3.2e-67 258.8 188 69.1
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 3.2e-67 258.8 190 65.8
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 3.2e-67 258.8 174 72.4
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 7.1e-67 257.7 183 69.4
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 1.2e-66 256.9 174 73.0
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 1.6e-66 256.5 176 70.5
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 1.6e-66 256.5 178 70.8
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 2.1e-66 256.1 174 73.0
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 2.7e-66 255.8 182 67.6
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 2.7e-66 255.8 186 67.7
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 6.0e-66 254.6 182 68.1
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 6.0e-66 254.6 175 70.9
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 6.0e-66 254.6 175 70.9
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 7.8e-66 254.2 179 69.8
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.0e-65 253.8 177 69.5
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.0e-65 253.8 204 62.7
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 1.0e-65 253.8 197 62.9
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 1.3e-65 253.4 186 67.7
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 2.3e-65 252.7 174 70.7
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 3.0e-65 252.3 195 65.1
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 5.1e-65 251.5 195 65.1
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 6.6e-65 251.1 176 69.9
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.1e-64 250.4 182 68.1
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.3e-64 248.8 175 69.1
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 5.6e-64 248.1 175 67.4
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 5.6e-64 248.1 179 68.2
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 9.6e-64 247.3 185 65.4
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 1.2e-63 246.9 175 68.6
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.1e-63 246.1 182 67.6
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 2.1e-63 246.1 152 77.6
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.6e-63 245.4 182 67.6
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 4.7e-63 245.0 186 63.4
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 4.7e-63 245.0 174 66.1
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 6.2e-63 244.6 187 64.7
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 6.2e-63 244.6 182 67.0
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 8.1e-63 244.2 175 67.4
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 3.1e-62 242.3 182 68.1
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 1.5e-61 240.0 174 66.7
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 2.6e-61 239.2 197 61.4
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 5.8e-61 238.0 182 63.7
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 7.6e-61 237.7 188 62.2
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 7.6e-61 237.7 174 66.1
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.3e-60 236.9 182 65.9
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.7e-60 236.5 182 63.7
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 3.8e-60 235.3 182 63.2
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 6.4e-60 234.6 177 65.5
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 3.2e-59 232.3 153 73.9
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 6.0e-58 228.0 183 59.6
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 2.3e-57 226.1 273 46.9
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 2.4e-54 216.1 181 55.8
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 7.6e-53 211.1 189 53.4
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.3e-52 210.3 149 70.5
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.9e-52 209.1 182 57.1
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 6.4e-52 208.0 189 51.9
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 6.4e-52 208.0 189 52.9
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 6.4e-52 208.0 150 66.0
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 2.4e-51 206.1 189 53.4
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 1.2e-50 203.8 189 52.4
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 1.6e-50 203.4 189 52.4
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 3.9e-49 198.7 189 52.9
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 5.1e-49 198.4 189 51.9
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 3.3e-48 195.7 189 52.9
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 4.8e-47 191.8 189 51.3
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 1.4e-46 190.3 189 50.8
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 1.4e-46 190.3 189 50.8
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 1.4e-46 190.3 189 50.8
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 9.0e-46 187.6 189 50.8
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 1.5e-45 186.8 207 50.2
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 7.6e-45 184.5 189 49.7
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 7.6e-45 184.5 189 49.7
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 6.4e-44 181.4 175 57.1
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 8.4e-44 181.0 186 54.3
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 8.7e-41 171.0 148 57.4
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.7e-36 156.8 106 73.6
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 9.3e-35 151.0 189 45.0
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 6.7e-33 144.8 155 52.3
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 2.7e-26 122.9 106 59.4
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 8.7e-25 117.9 78 66.7
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 6.3e-23 111.7 92 62.0
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 1.1e-22 110.9 163 41.1
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 1.1e-22 110.9 73 72.6
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 3.1e-22 109.4 157 40.8
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 1.2e-21 107.5 102 53.9
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 3.4e-21 105.9 80 67.5
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.4e-19 100.5 81 64.2
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.5e-19 99.8 80 63.8
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.2e-19 99.4 85 62.4
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 9.4e-19 97.8 80 62.5
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 2.7e-18 96.3 159 34.0
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 3.6e-18 95.9 161 37.9
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 5.1e-17 92.0 61 70.5
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 6.9e-14 81.6 97 47.4
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.8e-12 75.9 66 62.1
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.6e-10 70.5 90 47.8
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 1.1e-06 57.8 43 58.1


User provided reference genes

Program Settings