Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 1.9e-101 372.5 187 100.0
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 2.6e-66 255.8 181 74.6
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 1.4e-51 206.8 137 71.5
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 3.5e-50 202.2 161 64.6
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 4.5e-50 201.8 153 68.0
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 7.7e-50 201.1 185 58.4
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 1.0e-49 200.7 153 67.3
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 1.0e-49 200.7 142 69.7
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 1.0e-49 200.7 163 65.6
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 2.2e-49 199.5 146 69.2
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 2.2e-49 199.5 139 70.5
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 2.9e-49 199.1 150 66.0
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 3.8e-49 198.7 161 64.0
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 3.8e-49 198.7 143 67.1
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 5.0e-49 198.4 152 65.1
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 6.5e-49 198.0 161 64.0
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 6.5e-49 198.0 180 59.4
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 1.1e-48 197.2 146 68.5
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 1.5e-48 196.8 185 57.8
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 2.5e-48 196.1 137 69.3
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 2.5e-48 196.1 147 68.7
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 2.5e-48 196.1 137 68.6
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 2.5e-48 196.1 147 68.7
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 3.2e-48 195.7 178 61.8
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 4.2e-48 195.3 161 62.7
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 4.2e-48 195.3 145 66.2
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 5.5e-48 194.9 147 66.7
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 7.2e-48 194.5 137 67.9
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 7.2e-48 194.5 147 63.9
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 7.2e-48 194.5 165 60.6
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 9.4e-48 194.1 182 58.8
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 9.4e-48 194.1 181 59.1
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 9.4e-48 194.1 144 66.0
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 9.4e-48 194.1 163 60.7
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 9.4e-48 194.1 137 65.7
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 1.2e-47 193.7 138 68.8
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 1.2e-47 193.7 162 63.6
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 1.6e-47 193.4 161 64.0
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.1e-47 193.0 157 63.1
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 2.1e-47 193.0 153 66.0
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 2.1e-47 193.0 142 66.2
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 2.1e-47 193.0 116 81.0
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 2.7e-47 192.6 137 65.7
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 2.7e-47 192.6 137 68.6
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 3.6e-47 192.2 140 68.6
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 3.6e-47 192.2 147 63.3
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 4.7e-47 191.8 162 62.3
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 6.1e-47 191.4 162 62.3
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 6.1e-47 191.4 162 62.3
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 8.0e-47 191.0 147 62.6
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 1.0e-46 190.7 152 63.2
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 1.0e-46 190.7 173 59.0
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 1.4e-46 190.3 138 68.1
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 1.8e-46 189.9 162 62.3
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 1.8e-46 189.9 137 66.4
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 2.3e-46 189.5 147 63.9
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 2.3e-46 189.5 147 62.6
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 3.0e-46 189.1 181 56.4
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 3.0e-46 189.1 181 56.4
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 3.0e-46 189.1 137 67.9
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 4.0e-46 188.7 147 63.9
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 8.8e-46 187.6 142 64.8
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 8.8e-46 187.6 138 65.9
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 2.0e-45 186.4 137 65.7
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 2.0e-45 186.4 137 65.0
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 2.0e-45 186.4 137 65.7
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 3.4e-45 185.7 180 55.0
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 4.4e-45 185.3 163 60.7
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 5.7e-45 184.9 138 65.9
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 5.7e-45 184.9 137 64.2
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 5.7e-45 184.9 137 64.2
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 5.7e-45 184.9 178 56.2
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 1.3e-44 183.7 138 65.9
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 1.7e-44 183.3 160 59.4
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 1.7e-44 183.3 160 59.4
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 2.2e-44 183.0 186 51.6
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 3.7e-44 182.2 163 56.4
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 4.9e-44 181.8 136 66.9
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 6.3e-44 181.4 132 67.4
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 6.3e-44 181.4 132 66.7
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 1.1e-43 180.6 163 55.8
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 1.4e-43 180.3 137 62.0
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 7.0e-43 177.9 138 64.5
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 9.1e-43 177.6 147 62.6
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 9.1e-43 177.6 137 62.0
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 2.3e-41 172.9 123 69.1
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 2.3e-41 172.9 124 65.3
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 4.3e-40 168.7 146 61.0
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 4.3e-40 168.7 146 61.0
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 2.1e-39 166.4 143 60.8
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 3.6e-39 165.6 145 60.0
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 4.7e-39 165.2 162 53.1
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 2.3e-38 162.9 145 55.9
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.0e-38 162.5 113 68.1
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 8.9e-38 161.0 140 57.1
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 5.4e-35 151.8 168 49.4
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 2.7e-34 149.4 193 44.6
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 3.5e-34 149.1 145 51.7
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 1.0e-30 137.5 135 49.6
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 3.2e-27 125.9 141 48.2
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 8.6e-25 117.9 149 46.3
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.5e-24 116.3 179 41.3
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 4.4e-21 105.5 126 49.2
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 4.9e-20 102.1 78 62.8
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 6.4e-20 101.7 71 69.0
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 4.1e-19 99.0 71 63.4
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 9.2e-19 97.8 71 67.6
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 9.2e-19 97.8 71 66.2
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 9.2e-19 97.8 71 63.4
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 1.2e-18 97.4 71 62.0
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 7.8e-18 94.7 71 66.2
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.0e-17 94.4 66 63.6
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.0e-17 94.4 102 49.0
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 6.6e-17 91.7 73 63.0
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 3.3e-16 89.4 85 56.5
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 2.3e-14 83.2 101 47.5
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 2.3e-14 83.2 53 69.8
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 9.9e-13 77.8 79 53.2
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 3.5e-10 69.3 119 35.3
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 5.1e-09 65.5 52 63.5
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.9e-08 63.5 91 41.8
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 1.9e-08 63.5 93 41.9
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 1.9e-08 63.5 40 72.5
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 3.3e-08 62.8 42 64.3
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 4.3e-08 62.4 37 70.3
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 9.6e-08 61.2 47 57.4
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 2.8e-07 59.7 138 32.6
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 2.4e-06 56.6 40 65.0
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 4.0e-06 55.8 160 28.8


User provided reference genes

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