Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0158900 Oryza sativa ssp. japonica HOM05D000980 ORTHO05D000649 4.7e-118 427.9 225 100.0
Os12g0159000 Oryza sativa ssp. japonica HOM05D000980 ORTHO05D049643 3.2e-34 149.4 215 43.7
Zm00001eb164040 Zea mays HOM05D000980 ORTHO05D000649 1.6e-33 147.1 213 42.7
Zm00001eb139560 Zea mays HOM05D000980 ORTHO05D049643 2.7e-33 146.4 225 42.7
CARHR207060 Cardamine hirsuta HOM05D000980 ORTHO05D000649 4.5e-12 75.9 211 28.9
Glyma.19G198600 Glycine max HOM05D000980 ORTHO05D000649 4.5e-12 75.9 199 29.6
Sed0024613 Sechium edule HOM05D000980 ORTHO05D000649 1.7e-11 73.9 203 29.6
CiPaw.10G016300 Carya illinoinensis HOM05D000980 ORTHO05D000649 2.9e-11 73.2 202 28.2
Medtr7g105870 Medicago truncatula HOM05D000980 ORTHO05D000649 2.9e-11 73.2 204 27.5
THA.LOC104804070 Tarenaya hassleriana HOM05D000980 ORTHO05D000649 3.8e-11 72.8 196 30.6
Sed0009188 Sechium edule HOM05D000980 ORTHO05D000649 5.0e-11 72.4 206 30.1
Lalb_Chr02g0154521 Lupinus albus HOM05D000980 ORTHO05D000649 6.5e-11 72.0 214 29.0
BcaB01g05729 Brassica carinata HOM05D000980 ORTHO05D000649 8.5e-11 71.6 209 27.3
Glyma.03G201000 Glycine max HOM05D000980 ORTHO05D000649 8.5e-11 71.6 202 30.2
THA.LOC104827444 Tarenaya hassleriana HOM05D000980 ORTHO05D000649 1.1e-10 71.2 224 27.7
TWI12G0376 Tripterygium wilfordii HOM05D000980 ORTHO05D000649 1.1e-10 71.2 197 27.9
Psat3g029800 Pisum sativum HOM05D000980 ORTHO05D000649 1.5e-10 70.9 204 25.5
Ca_28071_v3 Cicer arietinum L. HOM05D000980 ORTHO05D000649 1.9e-10 70.5 202 28.7
CsaV3_3G037870 Cucumis sativus L. HOM05D000980 ORTHO05D000649 1.9e-10 70.5 177 29.9
CARHR129610 Cardamine hirsuta HOM05D000980 ORTHO05D000649 2.5e-10 70.1 187 27.3
MELO3C009531.2 Cucumis melo HOM05D000980 ORTHO05D000649 2.5e-10 70.1 197 27.9
Lj1g0003668 Lotus japonicus HOM05D000980 ORTHO05D000649 2.5e-10 70.1 206 28.6
Peaxi162Scf00939g00215 Petunia axillaris HOM05D000980 ORTHO05D000649 2.5e-10 70.1 212 26.9
MELO3C009530.2 Cucumis melo HOM05D000980 ORTHO05D000649 4.2e-10 69.3 203 30.0
ECA238G3008 Erigeron canadensis HOM05D000980 ORTHO05D000649 5.5e-10 68.9 219 26.0
Rhsim07G0207200 Rhododendron simsii HOM05D000980 ORTHO05D000649 7.2e-10 68.6 204 26.0
Duzib128G1373 Durio zibethinus HOM05D000980 ORTHO05D000649 9.4e-10 68.2 197 25.9
FAN14G5784 Fragaria x ananassa HOM05D000980 ORTHO05D000649 9.4e-10 68.2 201 29.4
FAN16G1827 Fragaria x ananassa HOM05D000980 ORTHO05D000649 1.2e-09 67.8 201 29.9
FAN25G0394 Fragaria x ananassa HOM05D000980 ORTHO05D000649 1.2e-09 67.8 201 29.9
CAN.G1245.12 Capsicum annuum HOM05D000980 ORTHO05D000649 1.6e-09 67.4 212 26.4
Gohir.A09G135000 Gossypium hirsutum HOM05D000980 ORTHO05D000649 1.6e-09 67.4 177 29.9
Sp6g36530 Schrenkiella parvula HOM05D000980 ORTHO05D000649 1.6e-09 67.4 182 28.6
Eucgr.K02611 Eucalyptus grandis HOM05D000980 ORTHO05D000649 2.1e-09 67.0 200 26.5
TAR633G1869 Trochodendron aralioides HOM05D000980 ORTHO05D000649 2.1e-09 67.0 179 28.5
TAR633G0806 Trochodendron aralioides HOM05D000980 ORTHO05D000649 2.7e-09 66.6 178 28.7
Eucgr.K02614 Eucalyptus grandis HOM05D000980 ORTHO05D000649 3.6e-09 66.2 203 26.6
Gohir.D09G131600 Gossypium hirsutum HOM05D000980 ORTHO05D000649 3.6e-09 66.2 177 29.9
Peaxi162Scf00211g00128 Petunia axillaris HOM05D000980 ORTHO05D000649 3.6e-09 66.2 207 28.0
CsaV3_3G037840 Cucumis sativus L. HOM05D000980 ORTHO05D000649 4.7e-09 65.9 190 26.8
Dinv12333 Davidia involucrata HOM05D000980 ORTHO05D000649 4.7e-09 65.9 205 27.3
FvH4_6g20140 Fragaria vesca HOM05D000980 ORTHO05D000649 4.7e-09 65.9 202 28.7
RcHm_v2.0_Chr3g0475631 Rosa chinensis HOM05D000980 ORTHO05D000649 4.7e-09 65.9 201 28.9
HPP92_006815 Vanilla planifolia HOM05D000980 ORTHO05D000649 4.7e-09 65.9 172 28.5
Os04g0685300 Oryza sativa ssp. japonica HOM05D000980 ORTHO05D000649 6.1e-09 65.5 187 27.8
QL07p036978 Quercus lobata HOM05D000980 ORTHO05D000649 6.1e-09 65.5 193 27.5
Glyma.03G201100 Glycine max HOM05D000980 ORTHO05D000649 8.0e-09 65.1 199 27.1
Nitab4.5_0000020g0190 Nicotiana tabacum HOM05D000980 ORTHO05D000649 8.0e-09 65.1 211 26.1
Psat6g085320 Pisum sativum HOM05D000980 ORTHO05D000649 8.0e-09 65.1 171 29.2
PGSC0003DMG400028153 Solanum tuberosum HOM05D000980 ORTHO05D000649 8.0e-09 65.1 213 26.8
FvH4_6g20130 Fragaria vesca HOM05D000980 ORTHO05D000649 1.4e-08 64.3 201 27.9
Phvul.001G194600 Phaseolus vulgaris HOM05D000980 ORTHO05D000649 1.4e-08 64.3 205 28.3
Haze_19700 Corylus avellana HOM05D000980 ORTHO05D000649 1.8e-08 63.9 184 25.5
FAN14G1799 Fragaria x ananassa HOM05D000980 ORTHO05D000649 1.8e-08 63.9 201 28.4
RhsimUnG0249100 Rhododendron simsii HOM05D000980 ORTHO05D000649 1.8e-08 63.9 208 26.0
RcHm_v2.0_Chr3g0475641 Rosa chinensis HOM05D000980 ORTHO05D000649 1.8e-08 63.9 201 28.4
Actinidia07938 Actinidia chinensis HOM05D000980 ORTHO05D000649 2.3e-08 63.5 196 27.6
Gorai.006G150200 Gossypium raimondii HOM05D000980 ORTHO05D000649 2.3e-08 63.5 177 29.4
Nitab4.5_0003105g0020 Nicotiana tabacum HOM05D000980 ORTHO05D000649 2.3e-08 63.5 211 26.1
PGR142G4095 Punica granatum HOM05D000980 ORTHO05D000649 2.3e-08 63.5 177 29.4
Haze_19696 Corylus avellana HOM05D000980 ORTHO05D000649 3.0e-08 63.2 184 25.5
Ca_11713_v3 Cicer arietinum L. HOM05D000980 ORTHO05D000649 4.0e-08 62.8 188 26.1
FAN05G0258 Fragaria x ananassa HOM05D000980 ORTHO05D000649 4.0e-08 62.8 205 26.8
FAN09G3461 Fragaria x ananassa HOM05D000980 ORTHO05D000649 4.0e-08 62.8 201 27.4
FAN14G3444 Fragaria x ananassa HOM05D000980 ORTHO05D000649 4.0e-08 62.8 201 27.4
Thecc.05G102200 Theobroma cacao HOM05D000980 ORTHO05D000649 4.0e-08 62.8 180 25.6
Eucgr.K02612 Eucalyptus grandis HOM05D000980 ORTHO05D000649 5.2e-08 62.4 203 26.6
Glyma.10G079400 Glycine max HOM05D000980 ORTHO05D000649 5.2e-08 62.4 219 27.9
Lj5g0017497 Lotus japonicus HOM05D000980 ORTHO05D000649 5.2e-08 62.4 190 26.8
RcHm_v2.0_Chr3g0475661 Rosa chinensis HOM05D000980 ORTHO05D000649 5.2e-08 62.4 201 26.9
CANSAT64G0277 Cannabis sativa HOM05D000980 ORTHO05D000649 6.7e-08 62.0 198 26.3
ClCG10G018430 Citrullus lanatus HOM05D000980 ORTHO05D000649 6.7e-08 62.0 190 26.3
Glyma.02G197800 Glycine max HOM05D000980 ORTHO05D000649 6.7e-08 62.0 217 29.0
VMungo1383G0412 Vigna mungo HOM05D000980 ORTHO05D000649 6.7e-08 62.0 173 30.6
Eucgr.A02597 Eucalyptus grandis HOM05D000980 ORTHO05D000649 8.8e-08 61.6 208 27.4
MBI17_g23875_MAGBIO Magnolia biondii HOM05D000980 ORTHO05D000649 8.8e-08 61.6 192 25.5
Sopen10g032500 Solanum pennellii HOM05D000980 ORTHO05D000649 8.8e-08 61.6 213 25.4
Lalb_Chr20g0111421 Lupinus albus HOM05D000980 ORTHO05D000649 1.1e-07 61.2 180 24.4
Medtr1g057270 Medicago truncatula HOM05D000980 ORTHO05D000649 1.1e-07 61.2 172 29.1
RcHm_v2.0_Chr3g0475651 Rosa chinensis HOM05D000980 ORTHO05D000649 1.1e-07 61.2 201 26.9
Ah.08g210100 Amaranthus hybridus HOM05D000980 ORTHO05D000649 1.5e-07 60.8 218 27.1
Cfa016682 Carpinus fangiana HOM05D000980 ORTHO05D000649 1.5e-07 60.8 184 25.5
FAN02G0899 Fragaria x ananassa HOM05D000980 ORTHO05D000649 1.5e-07 60.8 205 26.3
FAN09G1510 Fragaria x ananassa HOM05D000980 ORTHO05D000649 1.5e-07 60.8 205 26.3
Sed0013630 Sechium edule HOM05D000980 ORTHO05D000649 1.5e-07 60.8 180 26.1
Cfa016683 Carpinus fangiana HOM05D000980 ORTHO05D000649 2.0e-07 60.5 211 23.7
CsaV3_3G037860 Cucumis sativus L. HOM05D000980 ORTHO05D000649 2.0e-07 60.5 179 29.6
MBI17_g09694_MAGBIO Magnolia biondii HOM05D000980 ORTHO05D000649 2.0e-07 60.5 223 24.7
Sed0016968 Sechium edule HOM05D000980 ORTHO05D000649 2.0e-07 60.5 186 26.9
CAN.G246.4 Capsicum annuum HOM05D000980 ORTHO05D000649 2.6e-07 60.1 186 25.8
MELO3C009528.2 Cucumis melo HOM05D000980 ORTHO05D000649 2.6e-07 60.1 190 25.3
CsaV3_6G041040 Cucumis sativus L. HOM05D000980 ORTHO05D000649 2.6e-07 60.1 214 22.9
DCAR_016920 Daucus carota HOM05D000980 ORTHO05D000649 2.6e-07 60.1 197 26.4
PGSC0003DMG400016390 Solanum tuberosum HOM05D000980 ORTHO05D000649 2.6e-07 60.1 181 26.0
VMungo0720G0582 Vigna mungo HOM05D000980 ORTHO05D000649 2.6e-07 60.1 211 28.0
Cc06_g06450 Coffea canephora HOM05D000980 ORTHO05D000649 3.3e-07 59.7 174 26.4
MELO3C024581.2 Cucumis melo HOM05D000980 ORTHO05D000649 3.3e-07 59.7 214 22.4
Prupe.7G097200 Prunus persica HOM05D000980 ORTHO05D000649 3.3e-07 59.7 196 25.0
QL07p036994 Quercus lobata HOM05D000980 ORTHO05D000649 3.3e-07 59.7 223 24.7
RcHm_v2.0_Chr3g0475591 Rosa chinensis HOM05D000980 ORTHO05D000649 3.3e-07 59.7 205 25.9
PGSC0003DMG400000476 Solanum tuberosum HOM05D000733 ORTHO05D000649 3.3e-07 59.7 196 25.5
TWI31G0681 Tripterygium wilfordii HOM05D000733 ORTHO05D000649 3.3e-07 59.7 183 31.7
CAN.G1245.11 Capsicum annuum HOM05D000980 ORTHO05D000649 4.4e-07 59.3 212 25.0
Glyma.19G198700 Glycine max HOM05D000980 ORTHO05D000649 4.4e-07 59.3 199 26.1
CiPaw.09G019900 Carya illinoinensis HOM05D000980 ORTHO05D000649 5.7e-07 58.9 207 25.6
Nn6g34725 Nelumbo nucifera HOM05D000980 ORTHO05D000649 5.7e-07 58.9 195 25.6
Rhsim07G0206100 Rhododendron simsii HOM05D000980 ORTHO05D000649 5.7e-07 58.9 184 26.1
Duzib093G0606 Durio zibethinus HOM05D000980 ORTHO05D000649 7.5e-07 58.5 205 24.9
MBI17_g09705_MAGBIO Magnolia biondii HOM05D000980 ORTHO05D000649 7.5e-07 58.5 226 23.9
MBI17_g16305_MAGBIO Magnolia biondii HOM05D000980 ORTHO05D000649 7.5e-07 58.5 199 25.1
CiPaw.10G016400 Carya illinoinensis HOM05D000980 ORTHO05D000649 9.7e-07 58.2 200 28.0
MBI17_g47351_MAGBIO Magnolia biondii HOM05D000980 ORTHO05D000649 9.7e-07 58.2 226 23.9
Oeu052629.1 Olea europaea HOM05D000980 ORTHO05D000649 9.7e-07 58.2 172 25.6
QL07p037057 Quercus lobata HOM05D000980 ORTHO05D000649 9.7e-07 58.2 180 25.0
Sed0022825 Sechium edule HOM05D000980 ORTHO05D000649 9.7e-07 58.2 209 22.0
Duzib106G0118 Durio zibethinus HOM05D000980 ORTHO05D000649 1.3e-06 57.8 201 24.9
MBI17_g44016_MAGBIO Magnolia biondii HOM05D000980 ORTHO05D000649 1.3e-06 57.8 179 26.3
Sp4g17680 Schrenkiella parvula HOM05D000980 ORTHO05D000649 1.3e-06 57.8 187 24.6
TWI36G0929 Tripterygium wilfordii HOM05D000980 ORTHO05D000649 1.3e-06 57.8 201 26.9
CAN.G546.58 Capsicum annuum HOM05D000733 ORTHO05D000649 1.7e-06 57.4 187 26.2
Migut.J00713 Erythranthe guttata HOM05D000980 ORTHO05D000649 1.7e-06 57.4 200 24.0
MD12G1038600 Malus domestica HOM05D000980 ORTHO05D000649 1.7e-06 57.4 203 26.1
Solyc10g081980.2 Solanum lycopersicum HOM05D000980 ORTHO05D000649 1.7e-06 57.4 212 24.1
Phvul.001G194700 Phaseolus vulgaris HOM05D000980 ORTHO05D000649 2.2e-06 57.0 194 24.7
TPR.G23319 Trifolium pratense HOM05D000980 ORTHO05D000649 2.2e-06 57.0 204 24.5
TWI32G0933 Tripterygium wilfordii HOM05D000980 ORTHO05D000649 2.2e-06 57.0 184 25.5
MSTRG.5904 Avicennia marina HOM05D000980 ORTHO05D000649 2.8e-06 56.6 213 23.9
CiPaw.09G020000 Carya illinoinensis HOM05D000980 ORTHO05D000649 2.8e-06 56.6 207 25.1
MD14G1037300 Malus domestica HOM05D000980 ORTHO05D000649 2.8e-06 56.6 203 25.6
PSO170G0872 Papaver somniferum HOM05D000980 ORTHO05D000649 2.8e-06 56.6 186 25.3
C04p12720 Brassica napus HOM05D000980 ORTHO05D000649 4.8e-06 55.8 185 23.2
BraA05t19967Z Brassica rapa HOM05D000980 ORTHO05D000649 4.8e-06 55.8 187 22.5
CiPaw.10G016500 Carya illinoinensis HOM05D000980 ORTHO05D000649 4.8e-06 55.8 208 25.5
PSO017G1480 Papaver somniferum HOM05D000980 ORTHO05D000649 4.8e-06 55.8 215 24.2
Atru.chr8.1382 Acer truncatum HOM05D000980 ORTHO05D000649 6.3e-06 55.5 207 25.6
Migut.J00714 Erythranthe guttata HOM05D000980 ORTHO05D000649 6.3e-06 55.5 198 24.2
QL01p014798 Quercus lobata HOM05D000980 ORTHO05D000649 6.3e-06 55.5 176 23.9
Sopen01g003220 Solanum pennellii HOM05D000980 ORTHO05D000649 6.3e-06 55.5 181 23.8
unitig_22.g6649 Utricularia gibba HOM05D000733 ORTHO05D000649 6.3e-06 55.5 181 29.3
Zm00001eb434140 Zea mays HOM05D000980 ORTHO05D000649 6.3e-06 55.5 184 27.2
MBI17_g44277_MAGBIO Magnolia biondii HOM05D000980 ORTHO05D000649 8.2e-06 55.1 195 26.2
TAR636G2632 Trochodendron aralioides HOM05D000980 ORTHO05D000649 8.2e-06 55.1 181 26.5


User provided reference genes

Program Settings