Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0135200 Oryza sativa ssp. japonica HOM05D007713 ORTHO05D009748 2.6e-231 805.1 416 100.0
Os11g0138700 Oryza sativa ssp. japonica HOM05D007713 ORTHO05D009748 3.6e-225 784.6 416 97.1
Zm00001eb196340 Zea mays HOM05D007713 ORTHO05D009748 1.0e-150 537.3 425 71.8
BolC9t53535H Brassica oleracea HOM05D007713 ORTHO05D009748 5.0e-81 305.8 425 46.1
Cfa009929 Carpinus fangiana HOM05D007713 ORTHO05D009748 5.0e-81 305.8 446 44.2
BcaC04g23665 Brassica carinata HOM05D007713 ORTHO05D009748 1.4e-80 304.3 425 46.1
C09p06140 Brassica napus HOM05D007713 ORTHO05D009748 1.4e-80 304.3 425 46.1
A09p05580 Brassica napus HOM05D007713 ORTHO05D009748 7.2e-80 302.0 426 46.0
BraA09t36199Z Brassica rapa HOM05D007713 ORTHO05D009748 7.2e-80 302.0 425 45.6
Thhalv10004305m.g Eutrema salsugineum HOM05D007713 ORTHO05D009748 7.2e-80 302.0 420 45.5
BcaB04g19704 Brassica carinata HOM05D007713 ORTHO05D009748 9.3e-80 301.6 422 45.3
Manes.02G135500 Manihot esculenta HOM05D007713 ORTHO05D009748 2.1e-79 300.4 431 44.8
Gorai.001G132900 Gossypium raimondii HOM05D007713 ORTHO05D009748 2.7e-79 300.1 431 44.8
Gohir.D07G123200 Gossypium hirsutum HOM05D007713 ORTHO05D009748 1.0e-78 298.1 431 44.5
TAR636G2738 Trochodendron aralioides HOM05D007713 ORTHO05D009748 1.3e-78 297.7 423 43.3
Sopen11g029730 Solanum pennellii HOM05D007713 ORTHO05D009748 1.8e-78 297.4 431 43.6
Cpa.g.sc36.103 Carica papaya HOM05D007713 ORTHO05D009748 2.3e-78 297.0 429 44.3
Sp2g21080 Schrenkiella parvula HOM05D007713 ORTHO05D009748 2.3e-78 297.0 423 44.9
Hma1.2p1_0811F.1_g222080 Hydrangea macrophylla HOM05D007713 ORTHO05D009748 3.9e-78 296.2 431 42.5
Duzib168G2333 Durio zibethinus HOM05D007713 ORTHO05D009748 1.1e-77 294.7 424 44.3
Gohir.A07G118900 Gossypium hirsutum HOM05D007713 ORTHO05D009748 1.1e-77 294.7 428 44.2
Thecc.09G252200 Theobroma cacao HOM05D007713 ORTHO05D009748 1.1e-77 294.7 427 45.0
AL6G38870 Arabidopsis lyrata HOM05D007713 ORTHO05D009748 1.9e-77 293.9 419 44.2
TAR633G2062 Trochodendron aralioides HOM05D007713 ORTHO05D009748 5.7e-77 292.4 426 43.2
Carub.0006s2459 Capsella rubella HOM05D007713 ORTHO05D009748 9.7e-77 291.6 419 44.9
Dinv24613 Davidia involucrata HOM05D007713 ORTHO05D009748 1.3e-76 291.2 416 43.8
Peaxi162Scf00978g00032 Petunia axillaris HOM05D007713 ORTHO05D009748 2.2e-76 290.4 422 43.6
CiPaw.13G147100 Carya illinoinensis HOM05D007713 ORTHO05D009748 2.8e-76 290.0 431 43.4
CiPaw.12G120900 Carya illinoinensis HOM05D007713 ORTHO05D009748 6.3e-76 288.9 441 42.0
Actinidia06981 Actinidia chinensis HOM05D007713 ORTHO05D009748 8.2e-76 288.5 417 43.9
Rhsim13G0203800 Rhododendron simsii HOM05D007713 ORTHO05D009748 8.2e-76 288.5 477 40.9
TWI31G0070 Tripterygium wilfordii HOM05D007713 ORTHO05D009748 8.2e-76 288.5 423 43.0
MBI19_g04340_MAGBIO Magnolia biondii HOM05D007713 ORTHO05D009748 1.4e-75 287.7 338 51.2
Phvul.006G018200 Phaseolus vulgaris HOM05D007713 ORTHO05D009748 1.8e-75 287.3 422 42.9
SGA_v2.0_scaffold8G04513 Striga asiatica HOM05D007713 ORTHO05D009748 4.1e-75 286.2 431 43.6
ECA233G2058 Erigeron canadensis HOM05D007713 ORTHO05D009748 5.3e-75 285.8 434 42.9
AT5G26960 Arabidopsis thaliana HOM05D007713 ORTHO05D009748 9.1e-75 285.0 421 43.5
Haze_23299 Corylus avellana HOM05D007713 ORTHO05D009748 1.5e-74 284.3 392 44.6
Haze_23294 Corylus avellana HOM05D007713 ORTHO05D009748 2.0e-74 283.9 392 44.9
Oeu047953.1 Olea europaea HOM05D007713 ORTHO05D009748 2.6e-74 283.5 421 43.5
PGR119G2462 Punica granatum HOM05D007713 ORTHO05D009748 2.6e-74 283.5 434 43.5
Cc01_g07320 Coffea canephora HOM05D007713 ORTHO05D009748 4.5e-74 282.7 430 41.9
Aa31LG11G9740 Aethionema arabicum HOM05D007713 ORTHO05D009748 5.0e-73 279.3 424 43.6
Lj6g0023778 Lotus japonicus HOM05D007713 ORTHO05D009748 5.0e-73 279.3 425 44.5
AUR62006574 Chenopodium quinoa HOM05D007713 ORTHO05D009748 6.5e-73 278.9 427 43.3
QL01p016194 Quercus lobata HOM05D007713 ORTHO05D009748 1.4e-72 277.7 445 42.0
Ah.06g194890 Amaranthus hybridus HOM05D007713 ORTHO05D009748 1.9e-72 277.3 419 43.2
Potri.009G066500 Populus trichocarpa HOM05D007713 ORTHO05D009748 3.2e-72 276.6 435 42.3
CARHR186580 Cardamine hirsuta HOM05D007713 ORTHO05D009748 5.5e-72 275.8 421 42.5
Atru.chr3.2844 Acer truncatum HOM05D007713 ORTHO05D009748 7.2e-72 275.4 431 45.0
CSS0029086 Camellia sinensis var. sinensis HOM05D007713 ORTHO05D009748 9.4e-72 275.0 434 41.2
AUR62000228 Chenopodium quinoa HOM05D007713 ORTHO05D009748 1.6e-71 274.2 433 42.0
EL10Ac4g10074 Beta vulgaris HOM05D007713 ORTHO05D009748 4.6e-71 272.7 441 41.7
VMungo0540G1337 Vigna mungo HOM05D007713 ORTHO05D009748 7.9e-71 271.9 420 41.4
PSO765G0028 Papaver somniferum HOM05D007713 ORTHO05D009748 1.0e-70 271.6 447 39.6
PSO349G0341 Papaver somniferum HOM05D007713 ORTHO05D009748 3.0e-70 270.0 447 39.4
Potri.001G271900 Populus trichocarpa HOM05D007713 ORTHO05D009748 3.0e-70 270.0 434 42.2
ClCG03G014250 Citrullus lanatus HOM05D007713 ORTHO05D009748 8.8e-70 268.5 434 41.0
TPR.G11930 Trifolium pratense HOM05D007713 ORTHO05D009748 8.8e-70 268.5 427 41.0
Lsat_1_v5_gn_2_31700 Lactuca sativa HOM05D007713 ORTHO05D009748 1.1e-69 268.1 425 42.1
CsaV3_1G041980 Cucumis sativus L. HOM05D007713 ORTHO05D009748 1.7e-68 264.2 435 39.1
MELO3C015613.2 Cucumis melo HOM05D007713 ORTHO05D009748 4.8e-68 262.7 435 38.9
Sabra16G0167200 Salix brachista HOM05D007713 ORTHO05D009748 6.3e-68 262.3 437 42.1
Lalb_Chr07g0188901 Lupinus albus HOM05D007713 ORTHO05D009748 1.1e-67 261.5 426 39.7
Glyma.20G045100 Glycine max HOM05D007713 ORTHO05D009748 1.4e-67 261.2 435 40.7
Solyc11g072080.1 Solanum lycopersicum HOM05D007713 ORTHO05D009748 9.1e-67 258.5 378 43.1
PGSC0003DMG400027417 Solanum tuberosum HOM05D007713 ORTHO05D009748 1.5e-66 257.7 419 42.0
Sed0009065 Sechium edule HOM05D007713 ORTHO05D009748 2.6e-66 256.9 442 38.5
HanXRQChr03g0080051 Helianthus annuus HOM05D007713 ORTHO05D009748 1.7e-65 254.2 424 40.1
Medtr3g045210 Medicago truncatula HOM05D007713 ORTHO05D009748 5.5e-64 249.2 428 38.8
Aqoxy1G02561 Aquilegia oxysepala HOM05D007713 ORTHO05D009748 7.2e-64 248.8 434 37.3
Ca_26656_v3 Cicer arietinum L. HOM05D007713 ORTHO05D009748 3.6e-63 246.5 430 39.3
GSVIVG01037395001 Vitis vinifera HOM05D007713 ORTHO05D009748 3.3e-61 240.0 322 46.9
Ciclev10015393m.g Citrus clementina HOM05D007713 ORTHO05D009748 8.2e-60 235.3 425 38.8
THA.LOC104805019 Tarenaya hassleriana HOM05D007713 ORTHO05D009748 3.8e-57 226.5 430 39.5
Lj2P811T4 Lonicera japonica HOM05D007713 ORTHO05D009748 1.5e-56 224.6 258 51.9
Nitab4.5_0002567g0140 Nicotiana tabacum HOM05D007713 ORTHO05D009748 2.5e-56 223.8 260 49.2
COL.COLO4_33248 Corchorus olitorius HOM05D007713 ORTHO05D009748 1.2e-55 221.5 286 47.2
Nitab4.5_0002161g0070 Nicotiana tabacum HOM05D007713 ORTHO05D009748 4.7e-55 219.5 260 49.2
Nn7g36950 Nelumbo nucifera HOM05D007713 ORTHO05D009748 6.3e-52 209.1 300 43.7
Sc16g0010880 Simmondsia chinensis HOM05D007713 ORTHO05D009748 1.4e-46 191.4 236 49.2
SMO116G0438 Selaginella moellendorffii HOM05D007713 ORTHO05D009748 7.0e-43 179.1 415 35.4
Mapoly0014s0086 Marchantia polymorpha HOM05D007713 ORTHO05D009748 5.0e-41 172.9 393 31.6
Migut.D00708 Erythranthe guttata HOM05D007713 ORTHO05D009748 1.5e-40 171.4 414 34.1
Pp3c12_25210 Physcomitrium patens HOM05D007713 ORTHO05D009748 3.2e-40 170.2 395 31.9
SEGI_24675 Sequoiadendron giganteum HOM05D007713 ORTHO05D009748 4.2e-40 169.9 442 33.3
SEGI_20329 Sequoiadendron giganteum HOM05D007713 ORTHO05D009748 5.5e-40 169.5 395 31.6
Pp3c4_2880 Physcomitrium patens HOM05D007713 ORTHO05D009748 2.1e-39 167.5 410 31.5
HPP92_018395 Vanilla planifolia HOM05D007713 ORTHO05D009748 2.7e-34 150.6 149 54.4
CAN.G280.7 Capsicum annuum HOM05D007713 ORTHO05D009748 5.7e-29 132.9 424 31.4
ATR0307G040 Amborella trichopoda HOM05D007713 ORTHO05D009748 5.9e-26 122.9 486 27.6
unitig_736.g22903 Utricularia gibba HOM05D007713 ORTHO05D009748 2.3e-17 94.4 201 37.8
CBR_g38018 Chara braunii HOM05D000667 ORTHO05D003843 5.8e-13 79.7 254 29.5
Hund06081 Selenicereus undatus HOM05D000667 ORTHO05D003843 2.4e-11 74.3 215 32.1
CBR_g37301 Chara braunii HOM05D000667 ORTHO05D003095 1.2e-10 72.0 232 28.0
MBI07_g22517_MAGBIO Magnolia biondii HOM05D001337 ORTHO05D001281 6.0e-10 69.7 279 29.0
Zm00001eb241600 Zea mays HOM05D000667 ORTHO05D003843 2.3e-09 67.8 274 31.0
Eucgr.B03615 Eucalyptus grandis HOM05D001337 ORTHO05D001281 5.1e-09 66.6 270 31.5
BcaB01g01987 Brassica carinata HOM05D006360 ORTHO05D008045 6.6e-09 66.2 244 32.0
Cc11_g16820 Coffea canephora HOM05D000667 ORTHO05D003843 8.6e-09 65.9 219 26.5
BcaB01g01932 Brassica carinata HOM05D006360 ORTHO05D008045 1.1e-08 65.5 244 30.7
BolC9t53176H Brassica oleracea HOM05D002999 ORTHO05D003137 1.9e-08 64.7 244 31.1
Sabra10G0046400 Salix brachista HOM05D000667 ORTHO05D003843 1.9e-08 64.7 207 26.1
THA.LOC104807883 Tarenaya hassleriana HOM05D000667 ORTHO05D003843 1.9e-08 64.7 208 29.8
arahy.Tifrunner.gnm1.ann1.KI1H7A Arachis hypogaea HOM05D000667 ORTHO05D003843 2.5e-08 64.3 211 26.5
arahy.Tifrunner.gnm1.ann1.WH7KQ6 Arachis hypogaea HOM05D000667 ORTHO05D003843 2.5e-08 64.3 211 26.5
SGA_v2.0_scaffold87G27145 Striga asiatica HOM05D000667 ORTHO05D003843 2.5e-08 64.3 267 29.2
Zm00001eb168220 Zea mays HOM05D001337 ORTHO05D001281 2.5e-08 64.3 383 28.7
arahy.Tifrunner.gnm1.ann1.QM7S8Y Arachis hypogaea HOM05D000667 ORTHO05D003843 3.3e-08 63.9 211 26.5
Ah.03g136250 Amaranthus hybridus HOM05D000667 ORTHO05D003843 7.3e-08 62.8 211 27.0
AT1G67480 Arabidopsis thaliana HOM05D000667 ORTHO05D003843 9.5e-08 62.4 214 27.6
Os06g0594400 Oryza sativa ssp. japonica HOM05D001337 ORTHO05D001281 9.5e-08 62.4 296 28.4
BcaNung05812 Brassica carinata HOM05D000249 ORTHO05D000206 1.2e-07 62.0 238 29.8
BolC1t00061H Brassica oleracea HOM05D000249 ORTHO05D000206 1.2e-07 62.0 238 29.8
Sabra13G0090200 Salix brachista HOM05D000667 ORTHO05D003843 1.2e-07 62.0 220 28.6
Duzib248G1149 Durio zibethinus HOM05D000667 ORTHO05D003843 1.6e-07 61.6 212 28.8
DCAR_031193 Daucus carota HOM05D000667 ORTHO05D003843 2.1e-07 61.2 219 27.4
HPP92_023194 Vanilla planifolia HOM05D000667 ORTHO05D003843 2.1e-07 61.2 209 28.2
A09p02350 Brassica napus HOM05D006360 ORTHO05D008045 2.8e-07 60.8 244 31.1
C09p02460 Brassica napus HOM05D002999 ORTHO05D003137 2.8e-07 60.8 244 30.3
Gohir.A12G148500 Gossypium hirsutum HOM05D000667 ORTHO05D003843 2.8e-07 60.8 209 28.2
Zm00001eb277050 Zea mays HOM05D001337 ORTHO05D001281 2.8e-07 60.8 410 29.3
Sed0026806 Sechium edule HOM05D007183 ORTHO05D008829 3.6e-07 60.5 93 40.9
MBI05_g43695_MAGBIO Magnolia biondii HOM05D000249 ORTHO05D000206 4.7e-07 60.1 182 32.4
HPP92_007589 Vanilla planifolia HOM05D001337 ORTHO05D001281 4.7e-07 60.1 385 27.8
CDE06G0260 Ceratophyllum demersum HOM05D006360 ORTHO05D008045 6.2e-07 59.7 229 27.9
BolC8t52002H Brassica oleracea HOM05D000667 ORTHO05D003095 8.1e-07 59.3 219 30.6
Lj1P550T16 Lonicera japonica HOM05D000667 ORTHO05D002614 8.1e-07 59.3 229 26.6
MBI10_g06571_MAGBIO Magnolia biondii HOM05D001337 ORTHO05D001281 8.1e-07 59.3 270 30.0
Mapoly0096s0062 Marchantia polymorpha HOM05D000667 ORTHO05D003095 8.1e-07 59.3 219 27.9
SMO343G0007 Selaginella moellendorffii HOM05D000667 ORTHO05D008829 8.1e-07 59.3 225 28.4
TWI12G0559 Tripterygium wilfordii HOM05D006360 ORTHO05D008045 1.1e-06 58.9 237 27.8
MBI05_g43694_MAGBIO Magnolia biondii HOM05D000249 ORTHO05D000206 1.4e-06 58.5 182 31.3
C08p44570 Brassica napus HOM05D001040 ORTHO05D002795 1.8e-06 58.2 219 30.6
PSO017G3537 Papaver somniferum HOM05D000667 ORTHO05D003843 1.8e-06 58.2 222 28.4
PSO478G3524 Papaver somniferum HOM05D000667 ORTHO05D003843 1.8e-06 58.2 222 28.4
SEGI_10708 Sequoiadendron giganteum HOM05D000667 ORTHO05D003095 2.4e-06 57.8 219 26.5
AT3G46050 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 3.1e-06 57.4 183 29.0
Ca_08615_v3 Cicer arietinum L. HOM05D003852 ORTHO05D003095 3.1e-06 57.4 220 29.1
Ca_08623_v3 Cicer arietinum L. HOM05D003852 ORTHO05D003095 3.1e-06 57.4 220 29.1
HanXRQChr05g0140521 Helianthus annuus HOM05D007183 ORTHO05D008829 3.1e-06 57.4 92 39.1
Phvul.001G158600 Phaseolus vulgaris HOM05D006360 ORTHO05D008045 3.1e-06 57.4 254 28.7
CSS0006301 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D003843 4.0e-06 57.0 215 25.6
CSS0017115 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D003843 4.0e-06 57.0 215 25.6
Carub.0005s0538 Capsella rubella HOM05D000614 ORTHO05D000463 4.0e-06 57.0 219 29.7
Ca_16893_v3 Cicer arietinum L. HOM05D000249 ORTHO05D000206 4.0e-06 57.0 204 32.8
SMO137G0308 Selaginella moellendorffii HOM05D000667 ORTHO05D003095 4.0e-06 57.0 190 30.5
HanXRQChr14g0450711 Helianthus annuus HOM05D000614 ORTHO05D000463 5.2e-06 56.6 200 29.5
Pp3c13_12640 Physcomitrium patens HOM05D001337 ORTHO05D001281 5.2e-06 56.6 263 27.8
Thhalv10004304m.g Eutrema salsugineum HOM05D000614 ORTHO05D000463 6.8e-06 56.2 204 30.4
Phvul.001G153400 Phaseolus vulgaris HOM05D003852 ORTHO05D003095 6.8e-06 56.2 224 29.0
Sp7g36330 Schrenkiella parvula HOM05D000249 ORTHO05D000206 6.8e-06 56.2 239 26.8
SMO293G0012 Selaginella moellendorffii HOM05D000667 ORTHO05D003843 6.8e-06 56.2 191 28.3
TWI18G0015 Tripterygium wilfordii HOM05D000667 ORTHO05D003843 6.8e-06 56.2 210 24.8
HPP92_016125 Vanilla planifolia HOM05D001337 ORTHO05D001281 6.8e-06 56.2 283 28.3
Potri.013G104300 Populus trichocarpa HOM05D000667 ORTHO05D003843 8.9e-06 55.8 201 24.9
Thecc.01G263300 Theobroma cacao HOM05D006360 ORTHO05D008045 8.9e-06 55.8 236 27.1


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