Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0134500 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 5.7e-97 357.5 164 100.0
Os12g0143750 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 9.6e-12 74.3 77 48.1
Os12g0140600 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 4.7e-11 72.0 66 47.0
Os11g0146750 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 8.1e-11 71.2 89 43.8
BcaB02g07512 Brassica carinata HOM05D000082 ORTHO05D008126 2.4e-07 59.7 51 47.1
BcaC08g44939 Brassica carinata HOM05D000082 ORTHO05D008126 3.2e-07 59.3 51 47.1
C06p25670 Brassica napus HOM05D000082 ORTHO05D008126 3.2e-07 59.3 51 47.1
BolC6t37730H Brassica oleracea HOM05D000082 ORTHO05D008126 3.2e-07 59.3 51 47.1
Carub.0005s2551 Capsella rubella HOM05D000082 ORTHO05D008126 3.2e-07 59.3 54 42.6
CARHR169100 Cardamine hirsuta HOM05D000082 ORTHO05D008126 3.2e-07 59.3 51 47.1
Sp5g04130 Schrenkiella parvula HOM05D000082 ORTHO05D008126 3.2e-07 59.3 51 47.1
Thhalv10006182m.g Eutrema salsugineum HOM05D000082 ORTHO05D008126 4.2e-07 58.9 56 41.1
Actinidia24404 Actinidia chinensis HOM05D000082 ORTHO05D008126 5.4e-07 58.5 80 37.5
Aa31LG10G13330 Aethionema arabicum HOM05D000082 ORTHO05D008126 5.4e-07 58.5 54 42.6
AL5G40490 Arabidopsis lyrata HOM05D000082 ORTHO05D008126 5.4e-07 58.5 51 45.1
Potri.014G139400 Populus trichocarpa HOM05D000082 ORTHO05D008126 5.4e-07 58.5 80 35.0
AT3G58720 Arabidopsis thaliana HOM05D000082 ORTHO05D008126 7.1e-07 58.2 51 45.1
Cpa.g.c33616.1 Carica papaya HOM05D000082 ORTHO05D008126 7.1e-07 58.2 54 40.7
SGA_v2.0_scaffold389G50558 Striga asiatica HOM05D000082 ORTHO05D000038 7.1e-07 58.2 58 43.1
VMungo0251G2710 Vigna mungo HOM05D000086 ORTHO05D000295 7.1e-07 58.2 62 45.2
BcaC07g40220 Brassica carinata HOM05D000082 ORTHO05D008126 9.3e-07 57.8 51 47.1
Os12g0140200 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 9.3e-07 57.8 62 43.5
Os12g0140700 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 9.3e-07 57.8 62 43.5
HPP92_022451 Vanilla planifolia HOM05D018615 ORTHO05D003830 9.3e-07 57.8 57 42.1
HPP92_022453 Vanilla planifolia HOM05D018615 ORTHO05D003830 9.3e-07 57.8 57 42.1
HPP92_022456 Vanilla planifolia HOM05D018615 ORTHO05D003830 9.3e-07 57.8 57 42.1
Aqoxy1G01989 Aquilegia oxysepala HOM05D000082 ORTHO05D008126 1.2e-06 57.4 51 45.1
A07p24290 Brassica napus HOM05D000082 ORTHO05D008126 1.2e-06 57.4 51 45.1
A09p51270 Brassica napus HOM05D000082 ORTHO05D008126 1.2e-06 57.4 51 45.1
BraA07t30072Z Brassica rapa HOM05D000082 ORTHO05D008126 1.2e-06 57.4 51 45.1
BraA09t40567Z Brassica rapa HOM05D000082 ORTHO05D008126 1.2e-06 57.4 51 45.1
AUR62024042 Chenopodium quinoa HOM05D000082 ORTHO05D008126 1.2e-06 57.4 78 41.0
Medtr7g116210 Medicago truncatula HOM05D000086 ORTHO05D008850 1.2e-06 57.4 65 38.5
Phvul.003G276800 Phaseolus vulgaris HOM05D000086 ORTHO05D000431 1.2e-06 57.4 51 56.9
EL10Ac9g20992 Beta vulgaris HOM05D000082 ORTHO05D008126 1.6e-06 57.0 78 38.5
BcaC07g40290 Brassica carinata HOM05D000082 ORTHO05D008126 1.6e-06 57.0 51 43.1
C08p34040 Brassica napus HOM05D000082 ORTHO05D008126 1.6e-06 57.0 51 43.1
BolC8t51002H Brassica oleracea HOM05D000082 ORTHO05D008126 1.6e-06 57.0 51 43.1
Rhsim04G0078600 Rhododendron simsii HOM05D000082 ORTHO05D008126 1.6e-06 57.0 84 35.7
Rhsim04G0080100 Rhododendron simsii HOM05D000082 ORTHO05D008126 1.6e-06 57.0 84 35.7
Sabra14G0105100 Salix brachista HOM05D000082 ORTHO05D008126 1.6e-06 57.0 80 36.2
arahy.Tifrunner.gnm1.ann1.DG70MC Arachis hypogaea HOM05D000086 ORTHO05D000431 2.1e-06 56.6 82 42.7
AUR62040429 Chenopodium quinoa HOM05D000082 ORTHO05D008126 2.1e-06 56.6 78 39.7
ClCG07G002560 Citrullus lanatus HOM05D000082 ORTHO05D008126 2.1e-06 56.6 52 44.2
MELO3C018712.2 Cucumis melo HOM05D000082 ORTHO05D008126 2.1e-06 56.6 52 44.2
Dinv27337 Davidia involucrata HOM05D000082 ORTHO05D000038 2.1e-06 56.6 113 32.7
PGR042G1135 Punica granatum HOM05D000082 ORTHO05D008126 2.1e-06 56.6 50 46.0
COL.COLO4_10976 Corchorus olitorius HOM05D000082 ORTHO05D008126 2.7e-06 56.2 45 48.9
Haze_03747 Corylus avellana HOM05D002398 ORTHO05D002817 2.7e-06 56.2 49 44.9
CsaV3_7G005800 Cucumis sativus L. HOM05D000082 ORTHO05D008126 2.7e-06 56.2 51 45.1
Dinv24587 Davidia involucrata HOM05D000082 ORTHO05D008126 2.7e-06 56.2 74 35.1
Lj4P621T15 Lonicera japonica HOM05D000082 ORTHO05D000038 2.7e-06 56.2 88 34.1
Thecc.02G213000 Theobroma cacao HOM05D000082 ORTHO05D008126 2.7e-06 56.2 54 44.4
Duzib251G0775 Durio zibethinus HOM05D000082 ORTHO05D008126 3.5e-06 55.8 80 37.5
Gohir.D05G238050 Gossypium hirsutum HOM05D000082 ORTHO05D000038 3.5e-06 55.8 52 42.3
Gohir.D05G238632 Gossypium hirsutum HOM05D000082 ORTHO05D013924 3.5e-06 55.8 52 42.3
Gohir.D05G270820 Gossypium hirsutum HOM05D000082 ORTHO05D000038 3.5e-06 55.8 56 37.5
Manes.13G152000 Manihot esculenta HOM05D000082 ORTHO05D008126 3.5e-06 55.8 83 33.7
Psat2g143600 Pisum sativum HOM05D000086 ORTHO05D000431 3.5e-06 55.8 50 54.0
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 4.6e-06 55.5 48 41.7
FvH4_4g33600 Fragaria vesca HOM05D000082 ORTHO05D000038 4.6e-06 55.5 61 41.0
Gohir.D05G319300 Gossypium hirsutum HOM05D000082 ORTHO05D008126 4.6e-06 55.5 51 47.1
Gorai.009G342500 Gossypium raimondii HOM05D000082 ORTHO05D008126 4.6e-06 55.5 51 47.1
Rhsim04G0079400 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.6e-06 55.5 47 46.8
Sc13g0009700 Simmondsia chinensis HOM05D000354 ORTHO05D000717 4.6e-06 55.5 56 44.6
Lalb_Chr03g0030051 Lupinus albus HOM05D000082 ORTHO05D008126 6.0e-06 55.1 51 45.1
Pp3c15_2690 Physcomitrium patens HOM05D003544 ORTHO05D003830 6.0e-06 55.1 96 34.4
Sed0010134 Sechium edule HOM05D000082 ORTHO05D008126 6.0e-06 55.1 55 41.8
Ah.10g038380 Amaranthus hybridus HOM05D000082 ORTHO05D000038 7.8e-06 54.7 58 37.9
CSS0044666 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 7.8e-06 54.7 91 33.0
Gorai.009G246500 Gossypium raimondii HOM05D000082 ORTHO05D000038 7.8e-06 54.7 52 40.4
Gorai.009G247300 Gossypium raimondii HOM05D000082 ORTHO05D013924 7.8e-06 54.7 52 40.4
Medtr7g116200 Medicago truncatula HOM05D000086 ORTHO05D000311 7.8e-06 54.7 65 36.9


User provided reference genes

Program Settings