Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0121000 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 5.1e-69 264.2 129 100.0
Os11g0121300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 5.1e-61 237.7 126 92.1
Zm00001eb093770 Zea mays HOM05D003440 ORTHO05D003953 7.5e-20 100.9 134 49.3
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 2.3e-13 79.3 81 46.9
Thecc.04G064200 Theobroma cacao HOM05D003440 ORTHO05D003953 2.0e-12 76.3 51 56.9
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 2.6e-12 75.9 58 53.4
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 2.6e-12 75.9 51 54.9
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 2.6e-12 75.9 51 54.9
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 3.4e-12 75.5 63 49.2
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 4.4e-12 75.1 60 55.0
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 5.8e-12 74.7 80 42.5
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 9.8e-12 73.9 112 33.0
Potri.016G143400 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.3e-11 73.6 56 50.0
Potri.006G113700 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.7e-11 73.2 56 50.0
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 1.7e-11 73.2 53 52.8
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 1.7e-11 73.2 53 52.8
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 2.2e-11 72.8 57 54.4
TAR633G0436 Trochodendron aralioides HOM05D003440 ORTHO05D003953 2.2e-11 72.8 55 56.4
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 2.2e-11 72.8 89 40.4
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 2.9e-11 72.4 57 52.6
CDE12G0097 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 3.7e-11 72.0 107 34.6
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 3.7e-11 72.0 102 33.3
Dinv16919 Davidia involucrata HOM05D003440 ORTHO05D003953 4.9e-11 71.6 123 34.1
Sabra06G0088600 Salix brachista HOM05D003440 ORTHO05D003953 4.9e-11 71.6 56 48.2
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 6.4e-11 71.2 56 51.8
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 8.3e-11 70.9 51 52.9
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 8.3e-11 70.9 102 32.4
Aa31LG5G11290 Aethionema arabicum HOM05D000046 ORTHO05D000457 1.1e-10 70.5 124 33.9
PGR004G0491 Punica granatum HOM05D003440 ORTHO05D003953 1.1e-10 70.5 57 52.6
Aqoxy7G03195 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 1.4e-10 70.1 117 32.5
arahy.Tifrunner.gnm1.ann1.FBZP9J Arachis hypogaea HOM05D003440 ORTHO05D003953 1.4e-10 70.1 102 32.4
MBI15_g11745_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 1.9e-10 69.7 111 36.9
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 1.9e-10 69.7 60 48.3
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 2.4e-10 69.3 50 54.0
HanXRQChr11g0329301 Helianthus annuus HOM05D003440 ORTHO05D003953 2.4e-10 69.3 125 36.8
PSO384G1065 Papaver somniferum HOM05D003440 ORTHO05D003953 2.4e-10 69.3 65 46.2
SalBow6G6125 Salvia bowleyana HOM05D003440 ORTHO05D003953 3.2e-10 68.9 48 52.1
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 4.1e-10 68.6 56 53.6
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 4.1e-10 68.6 64 46.9
FAN02G2454 Fragaria x ananassa HOM05D003440 ORTHO05D003953 4.1e-10 68.6 53 50.9
HanXRQChr11g0329311 Helianthus annuus HOM05D003440 ORTHO05D003953 4.1e-10 68.6 87 43.7
Lsat_1_v5_gn_8_108200 Lactuca sativa HOM05D003440 ORTHO05D003953 4.1e-10 68.6 76 40.8
SalBow1G3495 Salvia bowleyana HOM05D003440 ORTHO05D003953 4.1e-10 68.6 48 52.1
Cfa016982 Carpinus fangiana HOM05D003440 ORTHO05D003953 5.4e-10 68.2 49 55.1
CSS0018403 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 7.0e-10 67.8 50 52.0
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 7.0e-10 67.8 66 39.4
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.2e-09 67.0 105 32.4
TWI74G0415 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.2e-09 67.0 107 36.4
Oeu040492.1 Olea europaea HOM05D003440 ORTHO05D003953 1.6e-09 66.6 48 50.0
CANSAT25G3389 Cannabis sativa HOM05D003440 ORTHO05D003953 2.0e-09 66.2 84 41.7
vmacro10410 Vaccinium macrocarpon HOM05D003440 ORTHO05D003953 2.0e-09 66.2 53 52.8
Aqoxy7G03194 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 2.7e-09 65.9 123 30.9
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 2.7e-09 65.9 105 31.4
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 2.7e-09 65.9 48 54.2
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 2.7e-09 65.9 48 54.2
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 2.7e-09 65.9 53 50.9
Sp6g41240 Schrenkiella parvula HOM05D003440 ORTHO05D003953 2.7e-09 65.9 55 50.9
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 2.7e-09 65.9 48 54.2
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 2.7e-09 65.9 48 54.2
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 2.7e-09 65.9 48 54.2
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 3.5e-09 65.5 48 54.2
Carub.0024s0002 Capsella rubella HOM05D003440 ORTHO05D003953 3.5e-09 65.5 56 48.2
PGR031G2316 Punica granatum HOM05D003440 ORTHO05D003953 3.5e-09 65.5 63 42.9
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 3.5e-09 65.5 48 52.1
Ciclev10013140m.g Citrus clementina HOM05D003440 ORTHO05D003953 6.0e-09 64.7 48 52.1
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 6.0e-09 64.7 70 38.6
Rhsim09G0129600 Rhododendron simsii HOM05D003440 ORTHO05D003953 6.0e-09 64.7 53 50.9
AL6G10020 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 7.8e-09 64.3 51 49.0
AT5G01015 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 7.8e-09 64.3 51 49.0
CSS0029757 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 7.8e-09 64.3 73 38.4
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 7.8e-09 64.3 48 52.1
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 7.8e-09 64.3 48 50.0
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 7.8e-09 64.3 48 50.0
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 7.8e-09 64.3 48 50.0
CDE04G0842 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 1.0e-08 63.9 88 36.4
CDE04G0952 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 1.0e-08 63.9 118 33.1
SGA_v2.0_scaffold122G33174 Striga asiatica HOM05D003440 ORTHO05D003953 1.0e-08 63.9 49 51.0
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.0e-08 63.9 48 52.1
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 1.3e-08 63.5 48 50.0
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.3e-08 63.5 48 50.0
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 1.7e-08 63.2 52 46.2
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
MELO3C008739.2 Cucumis melo HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 1.7e-08 63.2 52 46.2
CsaV3_2G009650 Cucumis sativus L. HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
Gohir.A05G391000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
Gohir.D04G026200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
Gorai.012G028800 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 52.1
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
Potri.019G053100 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 1.7e-08 63.2 89 36.0
Sabra19G0062600 Salix brachista HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
Sed0009834 Sechium edule HOM05D003440 ORTHO05D003953 1.7e-08 63.2 52 46.2
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 52.1
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 1.7e-08 63.2 48 50.0
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 2.3e-08 62.8 48 50.0
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 2.3e-08 62.8 48 52.1
COL.COLO4_20128 Corchorus olitorius HOM05D003440 ORTHO05D003953 2.3e-08 62.8 79 41.8
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 2.3e-08 62.8 48 50.0
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 2.3e-08 62.8 48 50.0
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 2.3e-08 62.8 48 50.0
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 2.3e-08 62.8 48 50.0
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 2.3e-08 62.8 48 50.0
MD04G1244000 Malus domestica HOM05D003440 ORTHO05D003953 2.3e-08 62.8 63 41.3
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 2.3e-08 62.8 48 50.0
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 2.3e-08 62.8 48 50.0
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 2.3e-08 62.8 48 50.0
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 2.3e-08 62.8 48 50.0
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 2.3e-08 62.8 48 50.0
ATR1127G125 Amborella trichopoda HOM05D003440 ORTHO05D003953 3.0e-08 62.4 76 42.1
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 3.0e-08 62.4 48 50.0
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 3.0e-08 62.4 48 50.0
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 3.0e-08 62.4 48 50.0
Lj1g0010972 Lotus japonicus HOM05D003440 ORTHO05D003953 3.0e-08 62.4 48 50.0
Phvul.008G054900 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 3.0e-08 62.4 107 32.7
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 3.0e-08 62.4 102 34.3
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 3.9e-08 62.0 114 36.0
Glyma.09G251300 Glycine max HOM05D003440 ORTHO05D003953 3.9e-08 62.0 107 32.7
Glyma.18G241200 Glycine max HOM05D003440 ORTHO05D003953 3.9e-08 62.0 107 32.7
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.9e-08 62.0 48 47.9
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 3.9e-08 62.0 48 50.0
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 3.9e-08 62.0 48 50.0
MBI11_g07420_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 3.9e-08 62.0 48 52.1
Peaxi162Scf00253g00722 Petunia axillaris HOM05D003440 ORTHO05D003953 3.9e-08 62.0 48 50.0
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 5.0e-08 61.6 48 47.9
MD12G1259800 Malus domestica HOM05D003440 ORTHO05D003953 5.0e-08 61.6 104 31.7
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 5.0e-08 61.6 48 47.9
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 5.0e-08 61.6 110 31.8
Sed0001280 Sechium edule HOM05D003440 ORTHO05D003953 5.0e-08 61.6 109 33.0
ATR0561G171 Amborella trichopoda HOM05D003440 ORTHO05D003953 6.6e-08 61.2 48 50.0
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 6.6e-08 61.2 48 47.9
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 6.6e-08 61.2 48 47.9
Psat3g103680 Pisum sativum HOM05D003440 ORTHO05D003953 6.6e-08 61.2 48 50.0
Cpa.g.sc39.4 Carica papaya HOM05D003440 ORTHO05D003953 8.6e-08 60.8 118 33.9
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 8.6e-08 60.8 79 39.2
FAN05G5443 Fragaria x ananassa HOM05D003440 ORTHO05D003953 8.6e-08 60.8 101 33.7
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 1.1e-07 60.5 48 47.9
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 1.1e-07 60.5 48 47.9
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 1.1e-07 60.5 48 47.9
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 1.1e-07 60.5 48 47.9
Haze_21225 Corylus avellana HOM05D003440 ORTHO05D003953 1.1e-07 60.5 50 50.0
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 1.1e-07 60.5 111 31.5
Hund21895 Selenicereus undatus HOM05D003440 ORTHO05D003953 1.1e-07 60.5 48 52.1
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 1.1e-07 60.5 48 47.9
TPR.G30343 Trifolium pratense HOM05D003440 ORTHO05D003953 1.1e-07 60.5 48 47.9
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 1.5e-07 60.1 64 37.5
MD12G1195900 Malus domestica HOM05D003440 ORTHO05D003953 1.9e-07 59.7 63 41.3
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 2.5e-07 59.3 123 28.5
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 2.5e-07 59.3 48 45.8
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 2.5e-07 59.3 48 45.8
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 2.5e-07 59.3 48 45.8
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 2.5e-07 59.3 48 45.8
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 2.5e-07 59.3 48 45.8
CiPaw.07G079500 Carya illinoinensis HOM05D003440 ORTHO05D003953 2.5e-07 59.3 46 50.0
FAN09G4309 Fragaria x ananassa HOM05D003440 ORTHO05D003953 2.5e-07 59.3 102 30.4
FAN14G3476 Fragaria x ananassa HOM05D003440 ORTHO05D003953 2.5e-07 59.3 102 30.4
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 2.5e-07 59.3 104 33.7
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 5.6e-07 58.2 105 29.5
Os01g0917300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 7.3e-07 57.8 118 31.4
PGSC0003DMG400011798 Solanum tuberosum HOM05D003440 ORTHO05D003953 7.3e-07 57.8 66 39.4
FAN05G4201 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.6e-06 56.6 57 47.4
HanXRQChr05g0150821 Helianthus annuus HOM05D003440 ORTHO05D003953 1.6e-06 56.6 50 46.0
RcHm_v2.0_Chr3g0459341 Rosa chinensis HOM05D003440 ORTHO05D003953 1.6e-06 56.6 57 47.4
Haze_04543 Corylus avellana HOM05D003440 ORTHO05D003953 2.1e-06 56.2 45 48.9
SMO331G0005 Selaginella moellendorffii HOM05D003440 ORTHO05D003953 2.1e-06 56.2 48 47.9
AUR62000320 Chenopodium quinoa HOM05D003440 ORTHO05D003953 2.8e-06 55.8 50 44.0
Peaxi162Scf00344g01116 Petunia axillaris HOM05D003440 ORTHO05D003953 3.6e-06 55.5 44 50.0
MELO3C010069.2 Cucumis melo HOM05D003440 ORTHO05D003953 4.7e-06 55.1 43 48.8
AUR62006666 Chenopodium quinoa HOM05D003440 ORTHO05D003953 6.2e-06 54.7 43 48.8
FAN14G4320 Fragaria x ananassa HOM05D003440 ORTHO05D003953 6.2e-06 54.7 57 45.6
Solyc09g005200.3 Solanum lycopersicum HOM05D003440 ORTHO05D003953 6.2e-06 54.7 40 52.5
Sopen09g001180 Solanum pennellii HOM05D003440 ORTHO05D003953 6.2e-06 54.7 40 52.5
Manes.08G166301 Manihot esculenta HOM05D003440 ORTHO05D003953 8.1e-06 54.3 63 38.1


User provided reference genes

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