Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 3.8e-143 511.5 267 100.0
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 3.6e-109 398.7 223 93.7
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 1.1e-73 280.8 231 68.0
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 1.1e-33 147.9 213 44.6
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 7.2e-33 145.2 214 44.4
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 3.9e-31 139.4 215 42.8
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 1.5e-30 137.5 230 40.0
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 3.3e-30 136.3 219 42.5
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 7.4e-30 135.2 222 41.0
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 2.2e-29 133.7 222 41.0
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 2.2e-29 133.7 218 41.7
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 6.3e-29 132.1 221 38.9
Zm00001eb025660 Zea mays HOM05D007204 ORTHO05D008593 8.2e-29 131.7 88 77.3
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 1.1e-28 131.3 221 40.7
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 1.8e-28 130.6 219 41.1
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 2.4e-28 130.2 220 40.0
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 2.4e-28 130.2 232 38.8
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 3.1e-28 129.8 233 39.1
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 4.1e-28 129.4 223 40.4
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 5.3e-28 129.0 218 40.4
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 7.0e-28 128.6 226 39.4
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 1.2e-27 127.9 213 39.4
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.6e-27 127.5 232 37.5
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 2.6e-27 126.7 213 38.5
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 4.5e-27 125.9 219 39.3
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 4.5e-27 125.9 218 38.5
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 7.7e-27 125.2 222 37.8
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 7.7e-27 125.2 222 40.5
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 7.7e-27 125.2 228 38.2
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 7.7e-27 125.2 220 39.5
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 7.7e-27 125.2 214 39.3
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 1.0e-26 124.8 227 37.4
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 1.0e-26 124.8 258 37.6
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 1.3e-26 124.4 233 36.9
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 1.7e-26 124.0 168 44.6
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 2.2e-26 123.6 227 37.4
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 2.2e-26 123.6 227 37.0
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 2.9e-26 123.2 223 39.9
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 2.9e-26 123.2 225 39.1
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 6.5e-26 122.1 261 36.0
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 6.5e-26 122.1 213 38.0
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 6.5e-26 122.1 165 46.1
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 8.5e-26 121.7 214 39.3
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 8.5e-26 121.7 228 36.8
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 8.5e-26 121.7 221 38.5
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 1.5e-25 120.9 228 38.2
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.9e-25 120.6 232 36.2
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 2.5e-25 120.2 190 37.9
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 2.5e-25 120.2 224 39.3
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 5.5e-25 119.0 287 33.4
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 2.7e-24 116.7 221 38.5
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 2.7e-24 116.7 227 35.7
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 6.1e-24 115.5 296 33.4
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 6.1e-24 115.5 220 35.5
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 1.0e-23 114.8 219 38.4
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 2.3e-23 113.6 239 35.6
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 2.3e-23 113.6 238 35.7
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 4.0e-23 112.8 245 34.3
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 1.1e-22 111.3 213 37.1
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.5e-22 110.9 188 39.4
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 1.5e-22 110.9 221 34.8
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 3.3e-22 109.8 217 37.3
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 3.3e-22 109.8 219 37.4
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 4.4e-22 109.4 245 34.3
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 9.7e-22 108.2 170 42.9
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 1.3e-21 107.8 236 35.2
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 2.2e-21 107.1 213 34.7
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 2.2e-21 107.1 184 41.3
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 2.8e-21 106.7 248 33.5
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 4.8e-21 105.9 163 41.1
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 8.2e-21 105.1 126 47.6
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 2.4e-20 103.6 173 41.0
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 7.0e-20 102.1 168 42.3
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 9.1e-20 101.7 166 41.6
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 9.1e-20 101.7 213 36.2
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 1.2e-19 101.3 174 38.5
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 2.7e-19 100.1 184 37.0
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.7e-19 100.1 210 32.4
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 2.7e-19 100.1 221 33.9
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 7.7e-19 98.6 219 33.8
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 7.7e-19 98.6 137 42.3
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 1.7e-18 97.4 179 38.5
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 2.2e-18 97.1 176 38.6
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 1.9e-17 94.0 193 36.3
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 2.5e-17 93.6 201 34.8
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 7.2e-17 92.0 268 32.5
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 7.2e-17 92.0 211 35.1
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 4.7e-16 89.4 144 39.6
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 6.8e-15 85.5 217 35.5
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 1.2e-14 84.7 124 41.1
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 5.7e-14 82.4 209 33.0
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 2.8e-13 80.1 142 37.3
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 1.4e-12 77.8 141 36.2
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.8e-12 77.4 277 27.4
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 7.0e-12 75.5 120 40.8
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 3.5e-11 73.2 119 40.3
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.3e-10 71.2 105 38.1
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.7e-10 70.9 105 38.1
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 1.7e-10 70.9 172 30.2
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 1.6e-08 64.3 131 35.9


User provided reference genes

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