Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0707900 Oryza sativa ssp. japonica HOM05D001641 ORTHO05D049825 1.0e-249 866.3 453 100.0
Zm00001eb164300 Zea mays HOM05D001641 ORTHO05D049825 1.3e-39 168.3 462 38.3
Zm00001eb288720 Zea mays HOM05D001641 ORTHO05D001667 4.3e-22 110.2 443 31.2
Os05g0450600 Oryza sativa ssp. japonica HOM05D001641 ORTHO05D001667 1.4e-20 105.1 418 31.6
Zm00001eb348150 Zea mays HOM05D001641 ORTHO05D001667 1.4e-20 105.1 329 34.0
Os01g0852400 Oryza sativa ssp. japonica HOM05D001641 ORTHO05D001667 1.8e-20 104.8 364 31.3
Zm00001eb367430 Zea mays HOM05D001641 ORTHO05D001667 1.3e-18 98.6 225 38.2
Zm00001eb147740 Zea mays HOM05D001641 ORTHO05D001667 3.0e-15 87.4 281 32.0
Dinv37084 Davidia involucrata HOM05D001641 ORTHO05D001667 5.1e-15 86.7 301 31.2
Lj2C80T3 Lonicera japonica HOM05D001641 ORTHO05D001667 1.5e-14 85.1 302 34.4
Nn2g13606 Nelumbo nucifera HOM05D001641 ORTHO05D001667 2.6e-14 84.3 296 32.4
TAR623G0053 Trochodendron aralioides HOM05D001641 ORTHO05D001667 2.6e-14 84.3 292 31.8
Sabra16G0107700 Salix brachista HOM05D001641 ORTHO05D001667 5.7e-14 83.2 307 31.3
CSS0004795 Camellia sinensis var. sinensis HOM05D001641 ORTHO05D001667 9.7e-14 82.4 303 30.0
CSS0016472 Camellia sinensis var. sinensis HOM05D001641 ORTHO05D001667 9.7e-14 82.4 303 30.0
Dinv35512 Davidia involucrata HOM05D001641 ORTHO05D001667 9.7e-14 82.4 413 28.1
Sabra06G0074200 Salix brachista HOM05D001641 ORTHO05D001667 1.3e-13 82.0 308 30.8
Thecc.05G021900 Theobroma cacao HOM05D001641 ORTHO05D001667 1.3e-13 82.0 303 31.7
Potri.006G096600 Populus trichocarpa HOM05D001641 ORTHO05D001667 1.7e-13 81.6 304 31.2
Gohir.A04G088300 Gossypium hirsutum HOM05D001641 ORTHO05D001667 2.8e-13 80.9 297 31.3
Duzib093G1558 Durio zibethinus HOM05D001641 ORTHO05D001667 6.3e-13 79.7 304 30.3
Potri.016G111400 Populus trichocarpa HOM05D001641 ORTHO05D001667 6.3e-13 79.7 307 30.6
COL.COLO4_14595 Corchorus olitorius HOM05D001641 ORTHO05D001667 8.2e-13 79.3 306 29.4
Gorai.012G111800 Gossypium raimondii HOM05D001641 ORTHO05D001667 8.2e-13 79.3 301 31.2
Hma1.2p1_0244F.1_g101220 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 8.2e-13 79.3 293 31.7
TAR369G0244 Trochodendron aralioides HOM05D001641 ORTHO05D001667 8.2e-13 79.3 296 31.1
Gohir.D04G128700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 1.1e-12 79.0 297 31.0
HanXRQChr10g0286991 Helianthus annuus HOM05D001641 ORTHO05D001667 1.1e-12 79.0 454 25.8
Ciclev10011239m.g Citrus clementina HOM05D001641 ORTHO05D001667 1.4e-12 78.6 294 31.0
Sed0014233 Sechium edule HOM05D001641 ORTHO05D001667 1.4e-12 78.6 403 28.5
TWI53G0423 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 1.8e-12 78.2 288 31.9
Manes.08G087800 Manihot esculenta HOM05D001641 ORTHO05D001667 3.1e-12 77.4 269 32.3
Sed0017639 Sechium edule HOM05D001641 ORTHO05D001667 4.1e-12 77.0 384 28.1
Atru.chr8.2199 Acer truncatum HOM05D001641 ORTHO05D001667 5.3e-12 76.6 309 29.4
Cpa.g.sc163.1 Carica papaya HOM05D001641 ORTHO05D001667 5.3e-12 76.6 292 30.5
Actinidia13778 Actinidia chinensis HOM05D001641 ORTHO05D001667 7.0e-12 76.3 297 30.3
Manes.09G102200 Manihot esculenta HOM05D001641 ORTHO05D001667 1.2e-11 75.5 298 29.5
Duzib106G0289 Durio zibethinus HOM05D001641 ORTHO05D001667 1.5e-11 75.1 305 29.2
Sc01g0006830 Simmondsia chinensis HOM05D001641 ORTHO05D001667 1.5e-11 75.1 303 29.7
CAN.G1297.3 Capsicum annuum HOM05D001641 ORTHO05D001667 2.0e-11 74.7 388 28.6
Nn2g11369 Nelumbo nucifera HOM05D001641 ORTHO05D001667 2.0e-11 74.7 296 32.8
Oeu044361.1 Olea europaea HOM05D001641 ORTHO05D001667 2.0e-11 74.7 440 27.3
PGR031G0169 Punica granatum HOM05D001641 ORTHO05D001667 2.0e-11 74.7 274 31.8
Aqoxy2G00992 Aquilegia oxysepala HOM05D001641 ORTHO05D001667 4.5e-11 73.6 294 32.7
CsaV3_4G026000 Cucumis sativus L. HOM05D001641 ORTHO05D001667 4.5e-11 73.6 400 28.5
Lj3g0020538 Lotus japonicus HOM05D001641 ORTHO05D001667 4.5e-11 73.6 281 33.5
Lsat_1_v5_gn_8_99861 Lactuca sativa HOM05D001641 ORTHO05D001667 5.9e-11 73.2 253 32.0
Sopen10g034530 Solanum pennellii HOM05D001641 ORTHO05D001667 5.9e-11 73.2 244 32.4
PGSC0003DMG400011018 Solanum tuberosum HOM05D001641 ORTHO05D001667 5.9e-11 73.2 244 32.4
Nitab4.5_0004912g0080 Nicotiana tabacum HOM05D001641 ORTHO05D001667 7.7e-11 72.8 245 31.8
CANSAT35G1325 Cannabis sativa HOM05D001641 ORTHO05D001667 1.0e-10 72.4 316 29.4
Nitab4.5_0000652g0140 Nicotiana tabacum HOM05D001641 ORTHO05D001667 1.0e-10 72.4 247 31.6
Peaxi162Scf00009g00195 Petunia axillaris HOM05D001641 ORTHO05D001667 1.3e-10 72.0 289 29.8
TWI77G0066 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 1.3e-10 72.0 252 31.0
Duzib128G0887 Durio zibethinus HOM05D001641 ORTHO05D001667 1.7e-10 71.6 256 30.9
HanXRQChr08g0220551 Helianthus annuus HOM05D001641 ORTHO05D001667 1.7e-10 71.6 359 26.2
Prupe.6G270900 Prunus persica HOM05D001641 ORTHO05D001667 1.7e-10 71.6 322 28.3
CiPaw.09G206200 Carya illinoinensis HOM05D001641 ORTHO05D001667 2.2e-10 71.2 314 29.6
ECA236G1576 Erigeron canadensis HOM05D001641 ORTHO05D001667 2.2e-10 71.2 359 27.6
Prupe.6G061700 Prunus persica HOM05D001641 ORTHO05D001667 2.9e-10 70.9 467 25.5
Aqoxy1G00708 Aquilegia oxysepala HOM05D001641 ORTHO05D001667 5.0e-10 70.1 314 32.2
MD11G1081400 Malus domestica HOM05D001641 ORTHO05D001667 6.5e-10 69.7 477 25.4
MD03G1077100 Malus domestica HOM05D001641 ORTHO05D001667 8.5e-10 69.3 467 25.7
ClCG04G007240 Citrullus lanatus HOM05D001641 ORTHO05D001667 1.5e-09 68.6 403 29.0
Sed0022239 Sechium edule HOM05D001641 ORTHO05D001667 1.9e-09 68.2 276 31.5
CDE02G2417 Ceratophyllum demersum HOM05D001641 ORTHO05D001667 2.5e-09 67.8 341 25.5
ClCG10G021840 Citrullus lanatus HOM05D001641 ORTHO05D001667 2.5e-09 67.8 290 29.0
MD12G1160400 Malus domestica HOM05D001641 ORTHO05D001667 2.5e-09 67.8 318 28.6
PSO339G0414 Papaver somniferum HOM05D001641 ORTHO05D001667 2.5e-09 67.8 285 30.9
PSO801G0666 Papaver somniferum HOM05D001641 ORTHO05D001667 2.5e-09 67.8 287 31.7
Cfa017255 Carpinus fangiana HOM05D001641 ORTHO05D001667 4.2e-09 67.0 311 28.3
Migut.J00224 Erythranthe guttata HOM05D001641 ORTHO05D001667 4.2e-09 67.0 443 25.1
Nitab4.5_0000008g0730 Nicotiana tabacum HOM05D001641 ORTHO05D001667 4.2e-09 67.0 310 28.4
MD04G1147100 Malus domestica HOM05D001641 ORTHO05D001667 5.5e-09 66.6 318 28.6
HanXRQChr15g0464001 Helianthus annuus HOM05D001641 ORTHO05D001667 7.2e-09 66.2 313 27.5
Hma1.2p1_0763F.1_g214660 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 7.2e-09 66.2 257 29.6
Haze_20951 Corylus avellana HOM05D001641 ORTHO05D001667 9.4e-09 65.9 315 27.9
Nitab4.5_0001837g0010 Nicotiana tabacum HOM05D001641 ORTHO05D001667 9.4e-09 65.9 310 28.1
SalBow5G3431 Salvia bowleyana HOM05D001641 ORTHO05D001667 1.2e-08 65.5 376 27.9
Haze_20953 Corylus avellana HOM05D001641 ORTHO05D001667 1.6e-08 65.1 317 27.8
Glyma.07G144900 Glycine max HOM05D001641 ORTHO05D001667 1.6e-08 65.1 344 27.3
Peaxi162Scf00141g00081 Petunia axillaris HOM05D001641 ORTHO05D001667 1.6e-08 65.1 304 28.6
Glyma.03G077200 Glycine max HOM05D001641 ORTHO05D001667 2.7e-08 64.3 290 29.7
MSTRG.5598 Avicennia marina HOM05D001641 ORTHO05D001667 3.6e-08 63.9 370 26.2
Lsat_1_v5_gn_9_36081 Lactuca sativa HOM05D001641 ORTHO05D001667 6.1e-08 63.2 304 29.6
Cc06_g01660 Coffea canephora HOM05D001641 ORTHO05D001667 8.0e-08 62.8 387 27.4
Phvul.010G008500 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 8.0e-08 62.8 332 28.9
Gorai.009G094200 Gossypium raimondii HOM05D001641 ORTHO05D001667 1.8e-07 61.6 384 26.3
MSTRG.26798 Avicennia marina HOM05D001641 ORTHO05D001667 2.3e-07 61.2 309 28.2
THA.LOC104814902 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 2.3e-07 61.2 273 28.2
THA.LOC104827040 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 3.0e-07 60.8 230 31.7
Glyma.01G111900 Glycine max HOM05D001641 ORTHO05D001667 3.9e-07 60.5 291 30.9
MBI05_g03457_MAGBIO Magnolia biondii HOM05D001641 ORTHO05D001667 3.9e-07 60.5 296 29.1
Oeu004615.1 Olea europaea HOM05D001641 ORTHO05D001667 3.9e-07 60.5 423 25.5
THA.LOC104810732 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 6.7e-07 59.7 261 30.3
arahy.Tifrunner.gnm1.ann1.4BEG1R Arachis hypogaea HOM05D001641 ORTHO05D001667 1.1e-06 58.9 320 25.6
BraA03t10508Z Brassica rapa HOM05D001641 ORTHO05D001667 1.5e-06 58.5 357 27.7
Gohir.A05G090700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 1.5e-06 58.5 384 25.3
Lalb_Chr13g0291271 Lupinus albus HOM05D001641 ORTHO05D001667 1.5e-06 58.5 335 26.9
HPP92_018038 Vanilla planifolia HOM05D001641 ORTHO05D001667 1.5e-06 58.5 541 24.2
C09p74550 Brassica napus HOM05D001641 ORTHO05D001667 2.6e-06 57.8 229 31.9
BolC9t60187H Brassica oleracea HOM05D001641 ORTHO05D001667 2.6e-06 57.8 229 31.9
Migut.L01994 Erythranthe guttata HOM05D001641 ORTHO05D001667 3.3e-06 57.4 254 29.5
SalBow5G3786 Salvia bowleyana HOM05D001641 ORTHO05D001667 3.3e-06 57.4 440 28.2
Solyc10g085070.3 Solanum lycopersicum HOM05D001641 ORTHO05D001667 3.3e-06 57.4 150 32.0
BraA10t45394Z Brassica rapa HOM05D001641 ORTHO05D001667 4.4e-06 57.0 307 27.7
DCAR_015457 Daucus carota HOM05D001641 ORTHO05D001667 4.4e-06 57.0 290 27.9
Aa31LG3G1600 Aethionema arabicum HOM05D001641 ORTHO05D001667 5.7e-06 56.6 287 27.9
Carub.0008s1957 Capsella rubella HOM05D001641 ORTHO05D001667 5.7e-06 56.6 294 28.9
PSO339G5641 Papaver somniferum HOM05D001641 ORTHO05D001667 7.4e-06 56.2 329 24.0
TWI74G0768 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 7.4e-06 56.2 250 28.0
VMungo0331G1007 Vigna mungo HOM05D001641 ORTHO05D001667 9.7e-06 55.8 315 27.0


User provided reference genes

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