Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 2.1e-67 258.8 125 100.0
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 2.0e-38 162.5 94 86.2
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 4.5e-38 161.4 94 83.0
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 5.9e-38 161.0 94 84.0
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 5.9e-38 161.0 94 85.1
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 7.7e-38 160.6 94 84.0
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 7.7e-38 160.6 94 84.0
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 7.7e-38 160.6 94 83.0
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 7.7e-38 160.6 94 84.0
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 7.7e-38 160.6 94 84.0
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 7.7e-38 160.6 94 84.0
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 7.7e-38 160.6 94 83.0
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 1.0e-37 160.2 94 84.0
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 1.0e-37 160.2 94 84.0
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 1.0e-37 160.2 94 84.0
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 1.0e-37 160.2 94 84.0
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 1.0e-37 160.2 94 84.0
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 1.0e-37 160.2 94 84.0
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 1.3e-37 159.8 94 83.0
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 1.3e-37 159.8 94 84.0
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 1.3e-37 159.8 94 83.0
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 1.3e-37 159.8 94 84.0
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 1.7e-37 159.5 94 83.0
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 5.0e-37 157.9 94 81.9
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 5.0e-37 157.9 94 81.9
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 6.5e-37 157.5 94 83.0
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 8.6e-37 157.1 94 80.9
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 8.6e-37 157.1 94 81.9
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 8.6e-37 157.1 94 80.9
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 8.6e-37 157.1 94 84.0
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 1.1e-36 156.8 94 81.9
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 1.1e-36 156.8 94 81.9
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 1.1e-36 156.8 94 81.9
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 1.1e-36 156.8 94 78.7
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 1.1e-36 156.8 94 80.9
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 1.5e-36 156.4 94 83.0
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 1.5e-36 156.4 94 80.9
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 1.5e-36 156.4 94 80.9
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 1.9e-36 156.0 94 79.8
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 2.5e-36 155.6 94 81.9
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 4.2e-36 154.8 94 78.7
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 5.5e-36 154.5 94 80.9
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 5.5e-36 154.5 94 80.9
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 5.5e-36 154.5 94 79.8
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 5.5e-36 154.5 94 79.8
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 5.5e-36 154.5 94 80.9
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 9.5e-36 153.7 94 79.8
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 9.5e-36 153.7 94 79.8
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 9.5e-36 153.7 94 80.9
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 9.5e-36 153.7 94 80.9
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 9.5e-36 153.7 94 80.9
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 9.5e-36 153.7 94 80.9
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 1.2e-35 153.3 94 78.7
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 1.6e-35 152.9 94 78.7
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 1.6e-35 152.9 94 80.9
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 2.1e-35 152.5 94 78.7
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 2.1e-35 152.5 94 78.7
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 2.1e-35 152.5 94 78.7
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 2.1e-35 152.5 94 78.7
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 2.1e-35 152.5 94 78.7
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 2.1e-35 152.5 94 79.8
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 2.1e-35 152.5 94 78.7
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 2.8e-35 152.1 94 77.7
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 2.8e-35 152.1 94 77.7
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 2.8e-35 152.1 94 77.7
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 2.8e-35 152.1 94 77.7
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 2.8e-35 152.1 94 77.7
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 3.6e-35 151.8 94 77.7
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 3.6e-35 151.8 94 78.7
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 4.7e-35 151.4 94 79.8
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 4.7e-35 151.4 94 77.7
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 4.7e-35 151.4 94 79.8
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 4.7e-35 151.4 94 79.8
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 4.7e-35 151.4 94 79.8
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 4.7e-35 151.4 94 79.8
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 4.7e-35 151.4 94 79.8
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 4.7e-35 151.4 101 77.2
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 4.7e-35 151.4 94 79.8
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 6.1e-35 151.0 94 77.7
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 6.1e-35 151.0 94 78.7
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 1.0e-34 150.2 94 78.7
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 1.0e-34 150.2 94 77.7
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.0e-34 150.2 94 77.7
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 1.4e-34 149.8 93 78.5
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 1.8e-34 149.4 94 78.7
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 1.8e-34 149.4 94 77.7
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 1.8e-34 149.4 94 77.7
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 1.8e-34 149.4 94 77.7
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 2.3e-34 149.1 94 77.7
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 5.2e-34 147.9 94 77.7
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 6.8e-34 147.5 94 76.6
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 8.9e-34 147.1 94 75.5
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 1.5e-33 146.4 94 74.5
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 1.5e-33 146.4 94 76.6
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 3.4e-33 145.2 94 75.5
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 4.4e-33 144.8 83 85.5
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 5.7e-33 144.4 94 74.5
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 2.8e-32 142.1 107 70.1
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 2.8e-32 142.1 88 76.1
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 8.3e-32 140.6 94 73.4
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 1.4e-31 139.8 139 56.8
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 1.8e-31 139.4 85 78.8
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 3.1e-31 138.7 100 67.0
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 5.4e-31 137.9 97 68.0
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 9.2e-31 137.1 94 72.3
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 2.7e-30 135.6 146 52.1
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 3.3e-28 128.6 87 73.6
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 9.5e-28 127.1 149 49.7
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 2.8e-27 125.6 93 63.4
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 4.0e-26 121.7 66 86.4
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 4.0e-26 121.7 76 77.6
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 8.9e-26 120.6 95 55.8
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 3.4e-25 118.6 94 68.1
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 3.4e-25 118.6 66 83.3
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 9.8e-25 117.1 67 82.1
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 1.3e-24 116.7 67 80.6
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 8.3e-24 114.0 66 77.3
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 1.1e-23 113.6 69 76.8
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 1.1e-23 113.6 66 77.3
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 5.4e-23 111.3 70 72.9
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 7.0e-23 110.9 66 78.8
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 2.0e-22 109.4 66 75.8
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 3.5e-22 108.6 66 75.8
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 3.5e-22 108.6 66 75.8
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 3.0e-21 105.5 67 74.6
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 1.9e-20 102.8 61 82.0
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 1.8e-18 96.3 63 73.0
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 6.8e-18 94.4 58 74.1
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 4.4e-17 91.7 95 45.3
Actinidia12881 Actinidia chinensis HOM05D005875 ORTHO05D007213 7.0e-15 84.3 51 78.4
arahy.Tifrunner.gnm1.ann1.02RT51 Arachis hypogaea HOM05D005875 ORTHO05D007213 1.3e-13 80.1 56 71.4
arahy.Tifrunner.gnm1.ann1.M3Y99M Arachis hypogaea HOM05D005875 ORTHO05D007213 7.5e-09 64.3 42 69.0
Cpa.g.sc81.58 Carica papaya HOM05D005875 ORTHO05D007213 5.4e-07 58.2 31 90.3


User provided reference genes

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