Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0704000 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 5.7e-65 251.1 165 100.0
Os05g0250500 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 3.8e-40 168.7 91 91.2
Zm00001eb409020 Zea mays HOM05D005678 ORTHO05D006894 2.3e-37 159.5 210 61.9
HanXRQChr17g0536371 Helianthus annuus HOM05D005678 ORTHO05D006894 3.3e-28 129.0 87 67.8
CARHR117620 Cardamine hirsuta HOM05D005678 ORTHO05D006894 1.6e-27 126.7 87 66.7
Cpa.g.sc244.11 Carica papaya HOM05D005678 ORTHO05D006894 2.8e-27 125.9 97 62.9
Eucgr.C02102 Eucalyptus grandis HOM05D005678 ORTHO05D006894 2.8e-27 125.9 92 64.1
THA.LOC104803592 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 3.6e-27 125.6 98 62.2
Nitab4.5_0008905g0030 Nicotiana tabacum HOM05D005678 ORTHO05D006894 4.8e-27 125.2 93 66.7
Migut.A00794 Erythranthe guttata HOM05D005678 ORTHO05D006894 6.2e-27 124.8 91 63.7
MD00G1173100 Malus domestica HOM05D005678 ORTHO05D006894 6.2e-27 124.8 90 62.2
MD08G1134200 Malus domestica HOM05D005678 ORTHO05D006894 6.2e-27 124.8 90 62.2
Nitab4.5_0001356g0020 Nicotiana tabacum HOM05D005678 ORTHO05D006894 6.2e-27 124.8 97 64.9
vmacro00604 Vaccinium macrocarpon HOM05D005678 ORTHO05D006894 6.2e-27 124.8 87 66.7
AL7G20710 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 8.1e-27 124.4 86 68.6
ECA246G1984 Erigeron canadensis HOM05D005678 ORTHO05D006894 8.1e-27 124.4 98 60.2
GSVIVG01035539001 Vitis vinifera HOM05D005678 ORTHO05D006894 8.1e-27 124.4 97 61.9
Carub.0007s0920 Capsella rubella HOM05D005678 ORTHO05D006894 1.4e-26 123.6 86 68.6
HanXRQChr06g0173291 Helianthus annuus HOM05D005678 ORTHO05D006894 1.4e-26 123.6 87 65.5
A01p06940 Brassica napus HOM05D005678 ORTHO05D006894 2.4e-26 122.9 86 67.4
BraA01t00642Z Brassica rapa HOM05D005678 ORTHO05D006894 2.4e-26 122.9 86 67.4
Oeu009186.1 Olea europaea HOM05D005678 ORTHO05D006894 2.4e-26 122.9 93 61.3
THA.LOC104801628 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 2.4e-26 122.9 98 60.2
Thecc.09G005500 Theobroma cacao HOM05D005678 ORTHO05D006894 2.4e-26 122.9 90 64.4
CAN.G859.10 Capsicum annuum HOM05D005678 ORTHO05D006894 3.1e-26 122.5 94 67.0
Sp7g29220 Schrenkiella parvula HOM05D005678 ORTHO05D006894 3.1e-26 122.5 86 66.3
Carub.0004s0379 Capsella rubella HOM05D005678 ORTHO05D006894 4.0e-26 122.1 85 67.1
Lsat_1_v5_gn_3_22720 Lactuca sativa HOM05D005678 ORTHO05D006894 4.0e-26 122.1 88 65.9
AT4G31360 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 5.3e-26 121.7 86 66.3
BcaC09g51917 Brassica carinata HOM05D005678 ORTHO05D006894 5.3e-26 121.7 86 67.4
C01p07670 Brassica napus HOM05D005678 ORTHO05D006894 5.3e-26 121.7 86 67.4
BolC1t00747H Brassica oleracea HOM05D005678 ORTHO05D006894 5.3e-26 121.7 86 67.4
MBI16_g25208_MAGBIO Magnolia biondii HOM05D005678 ORTHO05D006894 6.9e-26 121.3 170 45.9
Aa31LG2G19000 Aethionema arabicum HOM05D005678 ORTHO05D006894 9.0e-26 120.9 85 68.2
AT2G24440 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 9.0e-26 120.9 85 67.1
BcaB06g27969 Brassica carinata HOM05D005678 ORTHO05D006894 9.0e-26 120.9 90 62.2
AL4G14870 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 1.2e-25 120.6 85 65.9
A08p18690 Brassica napus HOM05D002168 ORTHO05D002277 1.5e-25 120.2 99 61.6
Lj5g0006596 Lotus japonicus HOM05D005678 ORTHO05D006894 1.5e-25 120.2 172 50.0
TAR383G0152 Trochodendron aralioides HOM05D005678 ORTHO05D006894 1.5e-25 120.2 91 59.3
Actinidia03578 Actinidia chinensis HOM05D005678 ORTHO05D006894 2.0e-25 119.8 87 64.4
Dinv16205 Davidia involucrata HOM05D005678 ORTHO05D006894 2.6e-25 119.4 89 64.0
Gohir.A05G065600 Gossypium hirsutum HOM05D005678 ORTHO05D006894 2.6e-25 119.4 90 63.3
Sopen08g029020 Solanum pennellii HOM05D005678 ORTHO05D006894 2.6e-25 119.4 89 66.3
arahy.Tifrunner.gnm1.ann1.V3TD4F Arachis hypogaea HOM05D005678 ORTHO05D006894 3.4e-25 119.0 96 61.5
arahy.Tifrunner.gnm1.ann1.XT6XQE Arachis hypogaea HOM05D005678 ORTHO05D006894 3.4e-25 119.0 96 61.5
CiPaw.08G018100 Carya illinoinensis HOM05D005678 ORTHO05D006894 3.4e-25 119.0 96 59.4
Manes.03G002700 Manihot esculenta HOM05D005678 ORTHO05D006894 3.4e-25 119.0 87 65.5
Gohir.D05G068200 Gossypium hirsutum HOM05D005678 ORTHO05D006894 4.5e-25 118.6 90 63.3
Gorai.009G069000 Gossypium raimondii HOM05D005678 ORTHO05D006894 4.5e-25 118.6 90 63.3
Potri.018G004901 Populus trichocarpa HOM05D005678 ORTHO05D006894 4.5e-25 118.6 96 59.4
BcaC02g08455 Brassica carinata HOM05D005678 ORTHO05D006894 5.8e-25 118.2 96 58.3
C04p54050 Brassica napus HOM05D005678 ORTHO05D006894 5.8e-25 118.2 96 58.3
BolC4t26956H Brassica oleracea HOM05D005678 ORTHO05D006894 5.8e-25 118.2 96 58.3
QL12p024739 Quercus lobata HOM05D005678 ORTHO05D006894 5.8e-25 118.2 85 64.7
PGSC0003DMG400003060 Solanum tuberosum HOM05D005678 ORTHO05D006894 5.8e-25 118.2 89 66.3
Ciclev10009502m.g Citrus clementina HOM05D005678 ORTHO05D006894 7.6e-25 117.9 90 60.0
Aa31LG7G11430 Aethionema arabicum HOM05D005678 ORTHO05D006894 9.9e-25 117.5 105 57.1
CiPaw.07G214300 Carya illinoinensis HOM05D005678 ORTHO05D006894 9.9e-25 117.5 87 62.1
Prupe.1G462000 Prunus persica HOM05D005678 ORTHO05D006894 9.9e-25 117.5 90 63.3
Sc09g0007960 Simmondsia chinensis HOM05D005678 ORTHO05D006894 9.9e-25 117.5 85 62.4
VMungo0647G1216 Vigna mungo HOM05D005678 ORTHO05D006894 1.3e-24 117.1 89 62.9
SGA_v2.0_scaffold146G36252 Striga asiatica HOM05D005678 ORTHO05D006894 1.7e-24 116.7 85 62.4
CANSAT25G2809 Cannabis sativa HOM05D005678 ORTHO05D006894 2.2e-24 116.3 87 63.2
SalBow6G4551 Salvia bowleyana HOM05D005678 ORTHO05D006894 2.2e-24 116.3 163 44.2
A04p18760 Brassica napus HOM05D005678 ORTHO05D006894 2.9e-24 115.9 96 58.3
ClCG08G012760 Citrullus lanatus HOM05D005678 ORTHO05D006894 2.9e-24 115.9 85 61.2
MELO3C011199.2 Cucumis melo HOM05D005678 ORTHO05D006894 2.9e-24 115.9 85 61.2
Duzib187G0563 Durio zibethinus HOM05D005678 ORTHO05D006894 2.9e-24 115.9 90 60.0
PSO063G6472 Papaver somniferum HOM05D005678 ORTHO05D006894 2.9e-24 115.9 86 61.6
PSO170G6167 Papaver somniferum HOM05D005678 ORTHO05D006894 2.9e-24 115.9 86 61.6
CsaV3_2G031490 Cucumis sativus L. HOM05D005678 ORTHO05D006894 3.8e-24 115.5 85 61.2
Sabra18G0010600 Salix brachista HOM05D005678 ORTHO05D006894 3.8e-24 115.5 96 57.3
BraA04t17485Z Brassica rapa HOM05D005678 ORTHO05D006894 6.4e-24 114.8 90 57.8
Thhalv10000334m.g Eutrema salsugineum HOM05D005678 ORTHO05D006894 6.4e-24 114.8 85 62.4
Phvul.001G058200 Phaseolus vulgaris HOM05D005678 ORTHO05D006894 6.4e-24 114.8 89 61.8
Hma1.2p1_0102F.1_g049830 Hydrangea macrophylla HOM05D005678 ORTHO05D006894 8.4e-24 114.4 90 57.8
Lalb_Chr24g0402441 Lupinus albus HOM05D005678 ORTHO05D006894 8.4e-24 114.4 86 64.0
PGR142G1712 Punica granatum HOM05D005678 ORTHO05D006894 8.4e-24 114.4 86 59.3
MD15G1109600 Malus domestica HOM05D005678 ORTHO05D006894 1.1e-23 114.0 87 60.9
Pp3c6_27420 Physcomitrium patens HOM05D005678 ORTHO05D006894 1.1e-23 114.0 87 56.3
A09p56300 Brassica napus HOM05D005678 ORTHO05D006894 1.9e-23 113.2 90 60.0
BraA09t41025Z Brassica rapa HOM05D005678 ORTHO05D006894 1.9e-23 113.2 90 60.0
Cc08_g14330 Coffea canephora HOM05D005678 ORTHO05D006894 1.9e-23 113.2 100 59.0
Sc09g0007970 Simmondsia chinensis HOM05D005678 ORTHO05D006894 1.9e-23 113.2 85 60.0
MSTRG.1882 Avicennia marina HOM05D005678 ORTHO05D006894 2.4e-23 112.8 91 60.4
C08p39250 Brassica napus HOM05D005678 ORTHO05D006894 4.2e-23 112.1 88 60.2
BolC8t51499H Brassica oleracea HOM05D005678 ORTHO05D006894 4.2e-23 112.1 90 58.9
FAN27G1837 Fragaria x ananassa HOM05D005678 ORTHO05D006894 4.2e-23 112.1 87 64.4
Sabra06G0213900 Salix brachista HOM05D005678 ORTHO05D006894 4.2e-23 112.1 97 55.7
BolC3t21115H Brassica oleracea HOM05D005678 ORTHO05D006894 5.4e-23 111.7 96 60.4
Sed0002806 Sechium edule HOM05D005678 ORTHO05D006894 5.4e-23 111.7 85 58.8
FvH4_2g30710 Fragaria vesca HOM05D005678 ORTHO05D006894 9.3e-23 110.9 87 64.4
FAN20G0695 Fragaria x ananassa HOM05D005678 ORTHO05D006894 9.3e-23 110.9 87 64.4
FAN24G1799 Fragaria x ananassa HOM05D000178 ORTHO05D001582 9.3e-23 110.9 87 64.4
FAN15G3337 Fragaria x ananassa HOM05D005678 ORTHO05D006894 1.6e-22 110.2 85 64.7
RcHm_v2.0_Chr6g0312181 Rosa chinensis HOM05D005678 ORTHO05D006894 1.6e-22 110.2 87 63.2
Duzib168G0107 Durio zibethinus HOM05D005678 ORTHO05D006894 2.1e-22 109.8 94 57.4
Glyma.17G201900 Glycine max HOM05D005678 ORTHO05D006894 1.0e-21 107.5 90 56.7
Sp4g03460 Schrenkiella parvula HOM05D005678 ORTHO05D006894 1.0e-21 107.5 85 54.1
TWI34G1196 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 1.0e-21 107.5 103 52.4
TPR.G12081 Trifolium pratense HOM05D005678 ORTHO05D006894 1.8e-21 106.7 84 59.5
Ca_12878_v3 Cicer arietinum L. HOM05D005678 ORTHO05D006894 2.3e-21 106.3 84 59.5
HPP92_015389 Vanilla planifolia HOM05D005678 ORTHO05D006894 3.9e-21 105.5 98 54.1
HPP92_027003 Vanilla planifolia HOM05D005678 ORTHO05D006894 3.9e-21 105.5 98 54.1
COL.COLO4_19050 Corchorus olitorius HOM05D005678 ORTHO05D006894 5.1e-21 105.1 96 52.1
Glyma.14G133100 Glycine max HOM05D005678 ORTHO05D006894 5.1e-21 105.1 105 52.4
Psat6g032200 Pisum sativum HOM05D005678 ORTHO05D006894 1.1e-20 104.0 85 60.0
SGA_v2.0_scaffold144G35960 Striga asiatica HOM05D000250 ORTHO05D002850 1.5e-20 103.6 90 51.1
TWI63G1651 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 1.9e-20 103.2 89 55.1
Aqoxy7G03048 Aquilegia oxysepala HOM05D005678 ORTHO05D006894 2.5e-20 102.8 86 54.7
Pp3c5_240 Physcomitrium patens HOM05D005678 ORTHO05D006894 5.6e-20 101.7 87 49.4
SEGI_38696 Sequoiadendron giganteum HOM05D005678 ORTHO05D006894 9.6e-20 100.9 87 51.7
BcaC07g40931 Brassica carinata HOM05D005678 ORTHO05D006894 1.3e-19 100.5 76 61.8
SHI21122 Sapria himalayana HOM05D005678 ORTHO05D006894 3.6e-19 99.0 82 52.4
Atru.chr7.2621 Acer truncatum HOM05D005678 ORTHO05D006894 4.0e-18 95.5 168 35.7
Hund19398 Selenicereus undatus HOM05D005678 ORTHO05D006894 5.3e-18 95.1 86 50.0
Mapoly0188s0010 Marchantia polymorpha HOM05D005678 ORTHO05D006894 6.9e-18 94.7 92 47.8
Sabra18G0000200 Salix brachista HOM05D005678 ORTHO05D006894 1.2e-17 94.0 141 39.0
CARHR239240 Cardamine hirsuta HOM05D005678 ORTHO05D006894 5.8e-17 91.7 59 71.2
BcaC01g01095 Brassica carinata HOM05D005678 ORTHO05D006894 1.7e-16 90.1 67 65.7
HanXRQChr04g0118101 Helianthus annuus HOM05D005678 ORTHO05D006894 4.9e-16 88.6 56 64.3
Migut.E01115 Erythranthe guttata HOM05D005678 ORTHO05D006894 2.1e-14 83.2 85 44.7
Haze_21702 Corylus avellana HOM05D005678 ORTHO05D006894 7.9e-14 81.3 53 66.0
Peaxi162Scf00102g01516 Petunia axillaris HOM05D005678 ORTHO05D006894 7.9e-14 81.3 57 66.7
Cre02.g120301 Chlamydomonas reinhardtii HOM05D005678 ORTHO05D006894 3.9e-13 79.0 64 46.9
Migut.E01114 Erythranthe guttata HOM05D005678 ORTHO05D006894 1.1e-12 77.4 90 44.4
Haze_21709 Corylus avellana HOM05D005678 ORTHO05D006894 4.0e-10 68.9 47 68.1
Rhsim09G0030000 Rhododendron simsii HOM05D005678 ORTHO05D006894 5.8e-09 65.1 106 35.8
C03p88040 Brassica napus HOM05D005678 ORTHO05D006894 3.5e-06 55.8 53 52.8


User provided reference genes

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