Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 0.0e+00 2104.7 1106 100.0
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 0.0e+00 1592.4 1107 77.2
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 0.0e+00 1110.1 1092 55.6
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1107.0 1101 55.1
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1106.7 1099 55.0
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1076.2 1091 53.5
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 1.4e-303 1046.6 1099 52.5
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 1.4e-303 1046.6 1064 54.3
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 2.3e-303 1045.8 1096 50.4
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 6.3e-301 1037.7 1101 52.9
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 1.1e-297 1026.9 1144 51.6
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 4.3e-297 1025.0 1093 51.5
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 1.3e-293 1013.4 1094 51.1
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 1.7e-293 1013.1 1058 51.1
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 4.9e-293 1011.5 1096 51.9
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 3.2e-292 1008.8 1100 50.6
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 1.3e-290 1003.4 1100 51.4
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 3.0e-290 1002.3 1097 52.0
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 1.1e-289 1000.3 1072 51.9
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 1.5e-289 1000.0 1100 50.5
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 1.9e-289 999.6 1097 50.8
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 5.6e-289 998.0 1098 49.9
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 7.3e-289 997.7 1111 50.9
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 3.6e-288 995.3 1120 50.3
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 2.3e-287 992.6 1099 50.9
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 3.1e-287 992.3 1093 51.1
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 1.2e-286 990.3 1096 51.8
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 2.6e-286 989.2 1099 49.3
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 3.4e-286 988.8 1071 51.9
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 7.5e-286 987.6 1100 50.8
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 2.9e-285 985.7 1093 50.7
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 1.9e-284 983.0 1093 50.9
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 4.1e-284 981.9 1104 50.3
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 6.0e-283 978.0 1101 51.1
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 1.1e-281 973.8 1103 50.2
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 7.3e-281 971.1 1095 50.6
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 2.8e-280 969.1 1097 48.9
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 2.8e-280 969.1 1090 50.5
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 3.6e-280 968.8 973 52.1
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 1.1e-279 967.2 1090 50.3
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 4.0e-279 965.3 1099 50.3
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 1.2e-278 963.8 1099 50.2
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 2.0e-278 963.0 1106 48.3
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 2.6e-278 962.6 1099 50.1
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 1.7e-277 959.9 1091 49.7
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 8.3e-277 957.6 1053 50.9
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 3.2e-276 955.7 1101 50.7
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 7.1e-276 954.5 1091 49.5
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 9.2e-276 954.1 1101 49.2
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 2.1e-275 953.0 1101 49.2
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 2.3e-274 949.5 1091 49.2
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 3.9e-274 948.7 1117 49.1
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 1.5e-273 946.8 1102 49.1
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 9.5e-273 944.1 1098 48.9
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 3.6e-272 942.2 1096 48.0
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 1.2e-270 937.2 1101 50.0
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 1.3e-269 933.7 1099 49.9
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 1.7e-269 933.3 1092 49.1
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 1.1e-268 930.6 1112 48.5
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 2.5e-265 919.5 965 50.6
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 1.2e-264 917.1 1006 48.8
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 5.2e-263 911.8 1097 47.9
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 1.6e-259 900.2 1095 47.4
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 1.3e-256 890.6 1100 47.5
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 7.6e-254 881.3 1105 47.2
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 1.7e-253 880.2 1095 46.8
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 8.4e-253 877.9 1070 48.1
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 2.1e-251 873.2 1168 45.7
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 1.0e-250 870.9 1094 47.0
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 3.9e-250 869.0 1196 42.6
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 8.7e-250 867.8 1095 46.6
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 3.3e-249 865.9 1096 46.4
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 3.3e-249 865.9 1097 47.3
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 1.4e-247 860.5 1096 46.3
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 2.9e-245 852.8 968 47.8
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 3.5e-243 845.9 977 47.0
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 1.0e-237 827.8 1109 45.9
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 3.8e-237 825.9 1100 44.7
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 8.4e-237 824.7 1109 45.6
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 1.0e-234 817.8 1091 42.1
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 1.4e-226 790.8 1136 42.4
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 2.2e-224 783.5 1094 45.1
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.2e-211 741.1 1110 39.8
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.2e-211 741.1 1110 39.8
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.2e-205 720.3 1131 41.0
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.5e-201 707.6 1101 42.3
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 5.5e-188 662.5 717 51.5
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 1.1e-180 638.3 647 51.3
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.0e-177 627.5 595 54.8
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 9.5e-172 608.6 1039 34.4
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 9.5e-172 608.6 1021 36.0
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 9.6e-132 475.7 628 46.5
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 4.6e-126 456.8 518 45.8
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 1.9e-124 451.4 302 77.5
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 1.5e-121 441.8 429 54.5
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 9.4e-103 379.4 722 32.3
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.6e-102 377.5 430 47.9
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.7e-99 367.5 467 40.9
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 3.4e-76 291.2 442 43.9
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 4.4e-76 290.8 194 93.8
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.7e-72 278.9 448 35.3
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 1.6e-70 272.3 151 88.1
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 3.7e-67 261.2 456 41.4
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 7.8e-65 253.4 1003 26.3
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 1.1e-63 249.6 817 25.8
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 2.2e-59 235.3 221 49.3
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 8.3e-59 233.4 405 39.0
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 5.4e-58 230.7 372 39.0
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 2.7e-57 228.4 657 27.5
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 1.7e-56 225.7 335 41.8
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 3.6e-46 191.4 133 72.2
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 1.7e-43 182.6 133 69.9
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 8.6e-40 170.2 114 71.9
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.9e-31 142.5 87 73.6
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 5.8e-28 131.0 248 35.1
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 5.8e-28 131.0 87 72.4
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 9.9e-28 130.2 87 72.4
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.1e-26 126.7 136 49.3
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.9e-24 118.2 120 50.8
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 6.6e-24 117.5 106 56.6
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 8.7e-24 117.1 103 55.3
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 5.6e-23 114.4 130 46.2
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 7.3e-23 114.0 260 35.8
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 2.8e-22 112.1 140 46.4
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.8e-21 109.4 105 53.3
Zm00001eb383150 Zea mays HOM05D005298 ORTHO05D030733 3.4e-20 105.1 62 79.0
Zm00001eb082360 Zea mays HOM05D005298 ORTHO05D030733 7.6e-20 104.0 62 79.0
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 9.9e-20 103.6 69 72.5
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 7.9e-17 94.0 113 40.7
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.0e-16 93.6 122 38.5
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 2.4e-13 82.4 111 44.1
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 6.9e-13 80.9 169 50.3
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 1.7e-11 76.3 220 42.7
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 2.2e-11 75.9 657 22.4
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 2.9e-11 75.5 48 68.8
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 6.5e-11 74.3 666 22.4
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 2.5e-10 72.4 657 21.8
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 2.1e-09 69.3 662 21.3
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 7.9e-09 67.4 68 42.6
A03p17820 Brassica napus HOM05D002786 ORTHO05D003493 3.7e-06 58.5 661 21.3
BraA03t11046Z Brassica rapa HOM05D002786 ORTHO05D003493 4.8e-06 58.2 661 21.6
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 4.8e-06 58.2 325 23.4


User provided reference genes

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