Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 1.9e-83 312.8 195 100.0
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 7.7e-77 290.8 194 93.8
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 3.1e-41 172.6 192 68.8
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 1.3e-23 114.0 188 54.3
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 4.2e-22 109.0 180 56.1
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 5.4e-22 108.6 180 54.4
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 9.3e-22 107.8 179 52.5
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 1.2e-21 107.5 182 55.5
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 2.1e-21 106.7 181 53.0
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.5e-21 105.9 189 50.8
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 1.0e-20 104.4 180 52.8
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 1.3e-20 104.0 180 53.3
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 2.3e-20 103.2 182 52.7
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 6.7e-20 101.7 184 52.7
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 1.1e-19 100.9 181 52.5
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 1.5e-19 100.5 181 50.3
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 3.3e-19 99.4 182 52.2
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 5.6e-19 98.6 181 50.8
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 7.4e-19 98.2 181 50.8
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 7.4e-19 98.2 180 51.1
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 1.6e-18 97.1 172 52.3
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 2.8e-18 96.3 183 53.0
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 3.7e-18 95.9 182 46.7
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 4.8e-18 95.5 193 49.7
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 8.1e-18 94.7 184 51.1
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 1.4e-17 94.0 180 37.8
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 1.8e-17 93.6 183 53.0
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 4.0e-17 92.4 182 51.6
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 5.3e-17 92.0 180 50.0
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 6.9e-17 91.7 186 49.5
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 6.9e-17 91.7 186 49.5
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 9.0e-17 91.3 181 49.2
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 1.2e-16 90.9 184 48.9
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 1.2e-16 90.9 195 47.2
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 1.5e-16 90.5 193 45.1
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 2.0e-16 90.1 181 47.5
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 2.6e-16 89.7 183 51.9
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 2.6e-16 89.7 179 46.4
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 3.4e-16 89.4 193 48.7
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 3.4e-16 89.4 184 51.6
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 3.4e-16 89.4 184 51.6
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 7.6e-16 88.2 183 48.6
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 1.3e-15 87.4 181 49.7
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 1.7e-15 87.0 187 46.5
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 2.2e-15 86.7 181 44.2
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 2.9e-15 86.3 195 46.2
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 3.8e-15 85.9 181 47.0
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 3.8e-15 85.9 181 49.2
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 3.8e-15 85.9 190 46.8
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 4.9e-15 85.5 180 36.1
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 4.9e-15 85.5 186 47.8
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 8.4e-15 84.7 162 50.6
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 1.1e-14 84.3 178 46.6
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 2.4e-14 83.2 191 44.5
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 2.4e-14 83.2 189 46.0
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 2.4e-14 83.2 187 46.0
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 4.2e-14 82.4 189 45.5
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 5.5e-14 82.0 156 51.9
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 7.1e-14 81.6 139 60.4
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 1.2e-13 80.9 200 45.0
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 2.1e-13 80.1 179 46.4
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 4.6e-13 79.0 185 48.1
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 2.3e-12 76.6 179 45.8
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 6.7e-12 75.1 183 44.8
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 1.5e-11 73.9 185 47.6
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 1.9e-11 73.6 179 45.3
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 2.8e-10 69.7 152 48.0
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 3.7e-10 69.3 159 51.6
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 4.8e-10 68.9 154 37.0
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 6.2e-10 68.6 182 47.3
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 9.0e-09 64.7 184 44.0
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 1.2e-08 64.3 64 53.1
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 1.5e-08 63.9 181 34.8
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 2.0e-08 63.5 188 45.7
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.0e-08 63.5 68 52.9
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 7.6e-08 61.6 65 50.8
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 1.3e-07 60.8 200 42.0
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 3.8e-07 59.3 188 42.6
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 6.5e-07 58.5 187 43.3
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 8.4e-07 58.2 81 42.0
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.1e-06 57.8 187 38.0
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.1e-06 57.8 187 38.0
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 7.1e-06 55.1 61 47.5


User provided reference genes

Program Settings