Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 4.8e-117 424.5 211 100.0
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 4.4e-78 295.0 176 84.7
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.7e-13 80.5 122 39.3
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 3.2e-12 76.3 155 36.1
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 5.5e-12 75.5 159 32.7
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.6e-11 73.9 159 32.7
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 2.1e-11 73.6 159 29.6
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.0e-10 71.2 116 37.9
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 1.4e-10 70.9 149 33.6
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 3.0e-10 69.7 156 28.8
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 8.8e-10 68.2 128 36.7
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 8.8e-10 68.2 154 31.8
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 8.8e-10 68.2 154 31.8
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 1.2e-09 67.8 114 37.7
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 1.5e-09 67.4 118 37.3
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 1.5e-09 67.4 171 31.6
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.0e-09 67.0 128 35.9
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 2.6e-09 66.6 131 32.1
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 3.4e-09 66.2 139 31.7
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 3.4e-09 66.2 139 31.7
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 3.4e-09 66.2 152 30.3
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 3.4e-09 66.2 163 33.7
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.4e-09 66.2 161 31.7
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 4.4e-09 65.9 129 35.7
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 5.7e-09 65.5 149 28.2
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 5.7e-09 65.5 160 30.0
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 7.5e-09 65.1 154 31.2
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 9.8e-09 64.7 150 32.0
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 9.8e-09 64.7 155 31.6
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.7e-08 63.9 150 32.0
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 2.2e-08 63.5 84 41.7
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 2.2e-08 63.5 152 29.6
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.8e-08 63.2 122 34.4
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 2.8e-08 63.2 159 29.6
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 2.8e-08 63.2 158 30.4
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 4.8e-08 62.4 89 40.4
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 8.3e-08 61.6 99 35.4
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 8.3e-08 61.6 161 29.8
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 1.1e-07 61.2 89 38.2
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.1e-07 61.2 89 38.2
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.1e-07 61.2 89 38.2
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 1.1e-07 61.2 155 27.1
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.1e-07 61.2 151 29.8
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 1.1e-07 61.2 91 39.6
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 1.4e-07 60.8 63 46.0
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.8e-07 60.5 149 31.5
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.8e-07 60.5 157 29.3
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 1.8e-07 60.5 153 30.7
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 2.4e-07 60.1 44 63.6
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 2.4e-07 60.1 157 25.5
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 2.4e-07 60.1 150 30.7
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 2.4e-07 60.1 157 28.7
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 3.1e-07 59.7 44 63.6
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.1e-07 59.7 151 31.8
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 4.1e-07 59.3 166 28.9
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 5.4e-07 58.9 60 50.0
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 5.4e-07 58.9 60 50.0
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 5.4e-07 58.9 96 36.5
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 5.4e-07 58.9 35 77.1
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 5.4e-07 58.9 54 48.1
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 5.4e-07 58.9 155 29.7
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 7.0e-07 58.5 43 65.1
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 9.1e-07 58.2 111 36.0
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 9.1e-07 58.2 111 35.1
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.2e-06 57.8 120 35.8
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.2e-06 57.8 89 38.2
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.2e-06 57.8 105 38.1
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 1.2e-06 57.8 105 38.1
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 1.2e-06 57.8 105 38.1
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.6e-06 57.4 42 50.0
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 1.6e-06 57.4 165 26.7
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 2.0e-06 57.0 105 37.1
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 2.7e-06 56.6 136 27.9
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 3.5e-06 56.2 33 72.7
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 3.5e-06 56.2 51 54.9
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 3.5e-06 56.2 37 70.3
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 5.9e-06 55.5 105 36.2
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 5.9e-06 55.5 48 52.1
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 5.9e-06 55.5 38 60.5
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 5.9e-06 55.5 48 52.1
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 5.9e-06 55.5 163 29.4
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 7.7e-06 55.1 56 51.8
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 7.7e-06 55.1 102 32.4


User provided reference genes

Program Settings