Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 3.4e-141 505.0 253 100.0
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 5.4e-139 497.7 253 98.4
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 7.1e-115 417.5 249 81.5
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 4.6e-114 414.8 248 80.6
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 7.9e-114 414.1 250 80.4
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 7.9e-114 414.1 250 80.4
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 1.8e-113 412.9 250 80.0
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 2.3e-113 412.5 250 80.0
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.0e-113 412.1 249 79.9
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 5.1e-113 411.4 250 80.0
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 8.7e-113 410.6 246 80.1
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 1.1e-112 410.2 250 80.4
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.5e-112 409.8 245 80.4
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 1.9e-112 409.5 250 79.6
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 4.3e-112 408.3 249 79.9
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 4.3e-112 408.3 249 79.1
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 4.3e-112 408.3 249 79.1
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 4.3e-112 408.3 249 79.5
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 4.3e-112 408.3 250 78.4
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 5.6e-112 407.9 249 79.1
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 5.6e-112 407.9 250 78.8
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 7.4e-112 407.5 250 78.4
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 1.3e-111 406.8 250 78.4
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 1.6e-111 406.4 249 79.9
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 1.6e-111 406.4 249 78.7
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 1.6e-111 406.4 250 78.8
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 2.1e-111 406.0 249 78.7
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 2.8e-111 405.6 246 80.5
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 4.8e-111 404.8 249 79.1
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 4.8e-111 404.8 249 79.5
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 4.8e-111 404.8 250 78.0
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 4.8e-111 404.8 250 78.4
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 6.2e-111 404.4 249 79.1
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 6.2e-111 404.4 250 77.6
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 6.2e-111 404.4 245 79.2
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 1.1e-110 403.7 249 78.3
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 1.4e-110 403.3 250 78.4
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.8e-110 402.9 250 77.6
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.8e-110 402.9 249 79.9
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 1.8e-110 402.9 249 78.3
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 1.8e-110 402.9 250 78.8
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 2.4e-110 402.5 249 78.7
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 3.1e-110 402.1 249 79.9
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 3.1e-110 402.1 249 79.9
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 3.1e-110 402.1 249 77.9
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 4.0e-110 401.7 246 80.1
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 6.9e-110 401.0 250 78.0
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 6.9e-110 401.0 250 77.6
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 9.0e-110 400.6 249 78.3
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 9.0e-110 400.6 249 77.5
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.2e-109 400.2 249 77.9
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.2e-109 400.2 246 79.7
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 1.5e-109 399.8 249 77.5
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 2.6e-109 399.1 249 77.5
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 2.6e-109 399.1 249 77.5
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 2.6e-109 399.1 240 79.6
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 4.5e-109 398.3 249 76.3
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 4.5e-109 398.3 249 76.3
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.3e-108 396.7 249 75.9
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.3e-108 396.7 249 76.7
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 2.2e-108 396.0 249 76.3
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 2.2e-108 396.0 249 75.9
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 3.8e-108 395.2 249 75.9
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.1e-107 393.7 250 75.2
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 2.4e-107 392.5 249 75.5
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 2.4e-107 392.5 249 75.5
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 2.4e-107 392.5 249 77.9
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 3.2e-107 392.1 254 75.6
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 3.2e-107 392.1 250 74.8
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 5.5e-107 391.3 249 75.5
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 7.1e-107 391.0 257 73.9
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 9.3e-107 390.6 249 75.1
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 9.3e-107 390.6 249 75.1
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 1.2e-106 390.2 249 75.5
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 1.2e-106 390.2 249 75.5
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.6e-106 389.8 249 75.1
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.6e-106 389.8 249 75.1
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.1e-106 389.4 250 75.2
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 2.7e-106 389.0 249 74.7
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 2.7e-106 389.0 249 75.1
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 2.7e-106 389.0 269 72.5
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 6.0e-106 387.9 250 77.2
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 6.0e-106 387.9 249 74.7
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.0e-105 387.1 250 74.4
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.0e-105 387.1 267 73.0
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 4.3e-104 381.7 233 79.0
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 7.4e-104 380.9 233 80.7
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.6e-103 379.8 245 73.9
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 8.2e-103 377.5 296 66.6
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.8e-102 376.3 230 77.4
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 4.0e-102 375.2 296 64.2
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 6.5e-100 367.9 246 73.6
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 8.4e-100 367.5 249 72.7
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 9.3e-99 364.0 240 71.2
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 3.9e-97 358.6 358 55.3
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 8.7e-97 357.5 238 73.5
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 1.3e-95 353.6 244 71.7
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 6.9e-94 347.8 251 68.5
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 5.9e-93 344.7 254 68.9
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 6.5e-92 341.3 217 76.0
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 7.2e-91 337.8 187 91.4
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.8e-89 333.2 249 68.7
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 1.1e-86 323.9 236 67.8
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 6.9e-86 321.2 253 62.5
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 1.7e-84 316.6 250 66.0
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 2.9e-84 315.8 249 64.3
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.3e-80 302.4 193 75.1
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 5.9e-77 291.6 181 76.8
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.2e-75 285.4 194 73.2
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 7.9e-74 281.2 323 50.2
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 2.4e-70 269.6 238 52.5
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 1.5e-67 260.4 208 64.4
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 5.7e-64 248.4 249 49.4
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 2.8e-63 246.1 183 65.6
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.7e-60 236.9 152 75.0
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 3.8e-60 235.7 151 76.2
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 2.1e-58 229.9 210 60.0
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 7.5e-56 221.5 199 58.8
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 3.6e-50 202.6 250 48.0
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.4e-48 196.1 123 75.6
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 1.8e-46 190.3 246 43.9
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.2e-45 187.6 114 78.1
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.9e-44 183.0 99 86.9
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 2.9e-39 166.4 254 35.4
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 3.7e-39 166.0 100 75.0
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 5.4e-38 162.2 100 73.0
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 3.0e-36 156.4 114 65.8
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 1.8e-33 147.1 98 71.4
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 1.4e-30 137.5 158 54.4
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 3.4e-24 116.3 98 66.3
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.4e-17 94.4 67 67.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 7.6e-16 88.6 100 48.0
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 3.2e-14 83.2 55 74.5
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.2e-13 81.3 135 42.2
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 3.0e-12 76.6 44 77.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 9.6e-11 71.6 55 70.9
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 4.4e-08 62.8 30 90.0
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 1.3e-07 61.2 56 51.8


User provided reference genes

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