Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 6.5e-304 1046.6 524 100.0
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 2.0e-212 742.7 521 71.6
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 2.0e-212 742.7 519 71.9
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 3.8e-211 738.4 517 71.8
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.1e-210 736.9 518 71.4
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 1.9e-210 736.1 521 70.8
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 9.3e-210 733.8 521 71.6
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 4.6e-209 731.5 520 71.2
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 6.0e-209 731.1 520 71.3
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 1.9e-207 726.1 518 70.5
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 5.6e-207 724.5 518 70.3
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 9.6e-207 723.8 524 69.5
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 9.6e-207 723.8 520 70.4
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 9.6e-207 723.8 523 69.8
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 9.6e-207 723.8 514 70.8
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 1.3e-206 723.4 519 70.7
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 1.6e-206 723.0 525 71.2
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 1.6e-206 723.0 521 70.4
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.6e-206 723.0 519 70.1
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 2.1e-206 722.6 515 70.3
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 2.1e-206 722.6 522 69.9
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 2.8e-206 722.2 518 70.1
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 3.6e-206 721.8 522 70.5
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 3.6e-206 721.8 521 70.2
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 3.6e-206 721.8 521 70.2
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 4.8e-206 721.5 522 70.3
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 6.2e-206 721.1 520 69.4
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 8.1e-206 720.7 521 70.1
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 1.1e-205 720.3 514 69.3
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.8e-205 719.5 517 70.0
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 1.8e-205 719.5 523 69.0
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 2.4e-205 719.2 515 70.5
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 2.4e-205 719.2 518 69.5
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 4.0e-205 718.4 518 69.5
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 5.3e-205 718.0 522 69.3
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 9.0e-205 717.2 519 70.9
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 2.0e-204 716.1 515 69.1
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 3.4e-204 715.3 515 70.7
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 7.6e-204 714.1 520 69.2
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.3e-203 713.4 512 69.3
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 1.7e-203 713.0 517 69.6
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 2.2e-203 712.6 520 70.0
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 2.2e-203 712.6 519 69.7
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 2.2e-203 712.6 519 69.6
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 2.2e-203 712.6 522 68.8
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.9e-203 712.2 519 69.2
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 4.9e-203 711.4 516 70.0
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.1e-202 710.3 538 67.8
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.9e-202 709.5 535 67.7
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 2.4e-202 709.1 535 67.1
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 2.4e-202 709.1 521 68.9
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 2.4e-202 709.1 515 68.5
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 9.3e-202 707.2 519 68.8
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 1.2e-201 706.8 514 68.3
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 4.6e-201 704.9 520 68.1
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 6.0e-201 704.5 515 68.5
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 6.0e-201 704.5 515 68.0
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 7.9e-201 704.1 578 64.2
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 1.0e-200 703.7 516 69.4
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 1.8e-200 703.0 517 68.5
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 6.7e-200 701.0 524 69.3
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 1.9e-199 699.5 517 68.7
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 4.3e-199 698.4 515 69.7
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 7.4e-199 697.6 528 66.7
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 1.3e-198 696.8 495 70.1
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.1e-198 696.0 519 67.6
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 2.1e-198 696.0 513 69.6
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 3.7e-198 695.3 519 67.4
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 3.7e-198 695.3 519 67.4
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 6.9e-197 691.0 490 71.2
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 6.9e-197 691.0 518 67.0
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 9.0e-197 690.6 518 67.2
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 2.6e-196 689.1 512 67.6
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 4.5e-196 688.3 520 67.7
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.0e-195 687.2 525 66.7
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 2.9e-195 685.6 542 64.6
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 9.3e-194 680.6 523 65.4
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 3.5e-193 678.7 515 66.6
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 6.0e-193 677.9 515 66.4
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 3.9e-192 675.2 542 65.5
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 8.7e-192 674.1 550 63.3
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 2.8e-190 669.1 519 65.7
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 2.8e-190 669.1 534 64.8
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 5.3e-189 664.8 489 69.1
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 2.0e-188 662.9 518 64.9
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.0e-187 660.6 475 69.1
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.2e-187 659.4 516 64.9
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 7.2e-186 654.4 498 67.3
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 7.9e-185 651.0 520 65.2
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 7.4e-183 644.4 517 63.2
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 2.8e-182 642.5 518 63.9
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 7.2e-178 627.9 486 66.9
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 9.1e-173 610.9 524 61.5
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 9.4e-162 574.3 545 57.1
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 2.3e-160 569.7 583 55.6
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 6.7e-160 568.2 410 70.2
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 4.1e-157 558.9 498 61.0
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.7e-156 556.2 407 70.0
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 3.8e-155 552.4 403 67.7
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 2.8e-129 466.5 339 72.6
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 4.4e-119 432.6 217 96.3
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 4.3e-114 416.0 517 47.2
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 1.2e-113 414.5 351 62.7
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.4e-111 406.4 500 48.6
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 2.2e-110 403.7 558 41.6
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 4.9e-110 402.5 551 40.7
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 3.6e-105 386.3 557 41.1
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 3.1e-104 383.3 523 42.6
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 5.8e-103 379.0 277 70.8
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.4e-101 373.6 256 72.7
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 6.9e-96 355.5 291 61.5
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 4.5e-95 352.8 537 38.2
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.9e-93 347.4 252 67.9
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 7.6e-87 325.5 424 43.9
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 6.3e-73 279.3 627 33.0
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.1e-68 264.2 168 74.4
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.9e-66 257.7 314 50.6
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 2.0e-55 221.1 174 67.2
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 1.1e-48 198.7 152 64.5
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.4e-48 198.4 162 63.6
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.3e-48 196.4 255 47.5
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 7.7e-47 192.6 106 84.0
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 2.0e-42 177.9 701 25.8
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.9e-38 164.1 115 70.4
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 7.0e-32 142.9 109 66.1
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.4e-27 128.6 121 56.2
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.2e-27 126.7 99 61.6
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 6.3e-25 119.8 188 37.2
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 5.4e-24 116.7 77 74.0
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 4.0e-19 100.5 96 56.2
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.9e-17 94.4 100 53.0
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.5e-13 82.0 48 83.3
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 1.7e-09 68.6 150 30.7
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 7.0e-08 63.2 52 67.3
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 1.3e-06 58.9 132 33.3


User provided reference genes

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