Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 7.8e-97 357.1 174 100.0
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 3.1e-85 318.5 169 89.3
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 2.6e-76 288.9 169 79.3
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 8.4e-75 283.9 169 79.9
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 3.2e-74 282.0 169 76.9
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 4.2e-74 281.6 163 79.8
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 5.5e-74 281.2 169 78.1
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 9.3e-74 280.4 169 77.5
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 1.2e-73 280.0 169 76.9
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 2.1e-73 279.3 167 77.2
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 2.1e-73 279.3 167 77.2
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 2.7e-73 278.9 169 76.9
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 3.5e-73 278.5 169 78.1
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 4.6e-73 278.1 169 76.3
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 6.0e-73 277.7 169 77.5
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 6.0e-73 277.7 169 77.5
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 7.9e-73 277.3 170 76.5
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 1.8e-72 276.2 169 75.1
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 1.8e-72 276.2 167 76.0
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 1.8e-72 276.2 167 77.2
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 2.3e-72 275.8 169 76.3
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 3.0e-72 275.4 169 76.9
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 3.9e-72 275.0 169 75.7
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 3.9e-72 275.0 171 76.0
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 3.9e-72 275.0 169 76.9
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 3.9e-72 275.0 169 74.6
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 3.9e-72 275.0 170 77.6
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 3.9e-72 275.0 167 75.4
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 1.1e-71 273.5 169 75.1
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 1.1e-71 273.5 169 76.3
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 1.5e-71 273.1 169 74.6
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 1.5e-71 273.1 167 75.4
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 1.5e-71 273.1 167 76.0
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 1.9e-71 272.7 171 75.4
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 1.9e-71 272.7 169 76.3
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 1.9e-71 272.7 169 75.1
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 2.5e-71 272.3 164 78.7
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 3.3e-71 271.9 169 75.7
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 3.3e-71 271.9 170 77.1
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 7.4e-71 270.8 169 74.6
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 7.4e-71 270.8 169 73.4
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 7.4e-71 270.8 169 75.1
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 7.4e-71 270.8 169 75.7
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 9.7e-71 270.4 171 74.3
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 1.3e-70 270.0 167 74.9
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 2.2e-70 269.2 166 75.3
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 2.2e-70 269.2 167 74.9
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 2.8e-70 268.9 169 72.8
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 3.7e-70 268.5 167 73.7
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 4.8e-70 268.1 169 74.0
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 8.2e-70 267.3 169 74.0
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 8.2e-70 267.3 169 73.4
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 8.2e-70 267.3 170 72.4
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.8e-69 266.2 169 73.4
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 4.1e-69 265.0 169 74.6
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 4.1e-69 265.0 169 71.0
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 5.3e-69 264.6 169 71.0
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 6.9e-69 264.2 169 70.4
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 9.0e-69 263.8 169 73.4
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 1.2e-68 263.5 171 73.1
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.2e-68 263.5 169 72.8
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 2.0e-68 262.7 171 73.1
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 2.0e-68 262.7 169 70.4
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 2.0e-68 262.7 169 70.4
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.6e-68 262.3 168 73.2
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 2.6e-68 262.3 169 70.4
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.0e-67 260.4 200 63.5
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 1.7e-67 259.6 169 72.2
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 1.1e-66 256.9 171 72.5
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 1.4e-66 256.5 171 71.3
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 1.4e-66 256.5 171 71.3
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 7.2e-66 254.2 201 63.2
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 9.3e-66 253.8 201 64.2
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 1.2e-65 253.4 171 70.8
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 2.7e-65 252.3 206 61.7
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 1.0e-64 250.4 169 71.6
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 6.7e-64 247.7 151 76.2
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 3.3e-63 245.4 175 69.1
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 1.3e-62 243.4 220 58.6
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 6.3e-62 241.1 161 69.6
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 3.1e-61 238.8 199 60.3
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 6.9e-61 237.7 149 74.5
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.5e-60 236.5 144 76.4
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 1.0e-59 233.8 219 55.7
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 3.8e-59 231.9 147 71.4
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 3.8e-59 231.9 196 61.2
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 6.5e-59 231.1 172 65.1
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 3.2e-58 228.8 169 63.9
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 4.7e-57 224.9 151 71.5
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 3.9e-56 221.9 170 60.6
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 3.9e-56 221.9 172 61.6
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 5.0e-51 204.9 186 57.5
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 5.5e-50 201.4 169 62.1
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.4e-48 196.8 124 72.6
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 6.7e-48 194.5 267 44.9
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 4.8e-46 188.3 130 67.7
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 4.8e-46 188.3 166 54.2
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 3.1e-45 185.7 339 36.9
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 4.1e-45 185.3 153 60.8
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 7.0e-45 184.5 177 57.6
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 7.0e-45 184.5 177 57.6
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 2.9e-43 179.1 172 50.6
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 3.3e-39 165.6 114 68.4
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 7.5e-39 164.5 93 80.6
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 7.0e-37 157.9 114 64.9
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 2.7e-36 156.0 106 67.0
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 1.0e-32 144.1 97 68.0
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 2.4e-29 132.9 81 75.3
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 3.1e-29 132.5 144 50.0
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 4.3e-18 95.5 98 54.1
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 2.9e-14 82.8 90 51.1
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 1.1e-13 80.9 116 43.1
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 4.0e-08 62.4 47 61.7


User provided reference genes

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