Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 9.6e-98 360.1 181 100.0
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 2.3e-83 312.4 181 85.6
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 6.9e-80 300.8 181 82.3
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 5.7e-50 201.4 170 58.8
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 2.4e-48 196.1 171 57.3
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 7.7e-47 191.0 168 56.0
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.9e-45 186.4 176 54.0
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.5e-45 186.0 168 57.1
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.6e-44 183.3 168 54.8
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 2.8e-44 182.6 173 53.2
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 4.7e-44 181.8 176 53.4
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 4.7e-44 181.8 175 49.7
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 1.0e-43 180.6 167 55.1
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 1.4e-43 180.3 170 52.4
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 2.3e-43 179.5 167 54.5
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 3.0e-43 179.1 167 55.1
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 5.2e-43 178.3 164 54.9
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 5.2e-43 178.3 169 54.4
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 2.6e-42 176.0 175 53.1
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 3.4e-42 175.6 169 53.3
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 3.4e-42 175.6 167 55.1
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 3.4e-42 175.6 175 52.6
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 4.4e-42 175.3 176 52.3
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 4.4e-42 175.3 176 52.3
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 5.7e-42 174.9 172 50.6
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 7.5e-42 174.5 180 53.9
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 7.5e-42 174.5 174 54.0
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 7.5e-42 174.5 175 49.1
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 1.3e-41 173.7 167 51.5
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.7e-41 173.3 167 50.9
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 2.2e-41 172.9 167 52.1
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 3.7e-41 172.2 167 51.5
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 3.7e-41 172.2 167 54.5
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.7e-41 172.2 173 52.0
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 8.3e-41 171.0 169 51.5
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 8.3e-41 171.0 176 51.1
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.4e-40 170.2 175 52.6
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 1.8e-40 169.9 177 53.7
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.8e-40 169.9 175 51.4
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.8e-40 169.9 167 53.9
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 2.4e-40 169.5 162 52.5
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.4e-40 169.5 167 53.3
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 2.4e-40 169.5 167 53.3
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 3.1e-40 169.1 175 46.9
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 3.1e-40 169.1 175 48.6
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 5.4e-40 168.3 167 52.7
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.2e-39 167.2 167 54.5
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.2e-39 167.2 167 49.1
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.6e-39 166.8 168 50.0
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 2.0e-39 166.4 167 52.1
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.5e-39 165.6 176 47.2
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 4.5e-39 165.2 167 52.1
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 4.5e-39 165.2 176 46.6
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 7.8e-39 164.5 175 50.9
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.8e-39 164.5 162 52.5
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 1.0e-38 164.1 175 49.7
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 1.3e-38 163.7 177 49.2
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.3e-38 163.7 175 52.6
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 1.7e-38 163.3 167 52.1
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 1.7e-38 163.3 167 53.9
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.7e-38 163.3 162 52.5
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.7e-38 163.3 176 46.0
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 2.9e-38 162.5 175 48.0
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 3.9e-38 162.2 175 50.3
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 3.9e-38 162.2 167 50.9
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 3.9e-38 162.2 175 50.9
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 3.9e-38 162.2 167 51.5
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 5.0e-38 161.8 175 49.1
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 6.6e-38 161.4 168 51.2
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 8.6e-38 161.0 171 47.4
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 1.1e-37 160.6 175 48.6
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 1.1e-37 160.6 175 47.4
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 1.5e-37 160.2 162 51.2
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 1.9e-37 159.8 175 46.3
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 1.9e-37 159.8 175 47.4
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 2.5e-37 159.5 169 50.3
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 3.3e-37 159.1 168 48.8
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.3e-37 159.1 167 49.7
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 5.6e-37 158.3 170 48.8
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 9.5e-37 157.5 165 53.3
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.2e-36 157.1 166 49.4
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 2.1e-36 156.4 175 44.6
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 2.1e-36 156.4 175 44.6
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 2.1e-36 156.4 168 47.6
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 2.1e-36 156.4 168 47.6
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.1e-36 156.4 175 44.6
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 2.1e-36 156.4 168 48.8
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 2.8e-36 156.0 160 50.6
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.6e-36 155.6 167 46.7
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 4.7e-36 155.2 175 46.3
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 6.1e-36 154.8 167 50.3
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 8.0e-36 154.5 168 47.6
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 8.0e-36 154.5 164 51.2
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 1.0e-35 154.1 160 51.2
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.0e-35 154.1 164 50.0
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.0e-35 154.1 190 45.3
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 2.3e-35 152.9 175 42.9
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 3.1e-35 152.5 175 43.4
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 5.2e-35 151.8 172 46.5
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 1.5e-34 150.2 169 44.4
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.5e-34 150.2 173 45.7
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 2.0e-34 149.8 165 46.1
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 4.4e-34 148.7 167 44.9
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 5.8e-34 148.3 159 50.3
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 1.7e-33 146.7 156 48.7
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.7e-33 146.7 172 43.0
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 4.9e-33 145.2 175 48.6
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 4.9e-33 145.2 175 40.0
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 6.4e-33 144.8 156 48.7
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-31 140.6 175 42.9
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 3.5e-31 139.0 175 42.9
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 6.6e-30 134.8 175 44.6
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 6.6e-30 134.8 142 50.7
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 1.6e-28 130.2 155 47.1
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.4e-27 127.1 172 40.7
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 7.0e-24 114.8 169 40.2
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 3.5e-23 112.5 169 39.6
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 4.6e-23 112.1 161 42.2
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 4.4e-18 95.5 100 48.0
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 1.3e-17 94.0 96 46.9
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 6.4e-17 91.7 88 54.5
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 1.9e-16 90.1 155 37.4
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 4.6e-15 85.5 91 45.1
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 5.2e-11 72.0 161 29.8
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-10 70.9 66 56.1
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.2e-10 70.9 66 59.1
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.6e-10 69.7 66 57.6
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.6e-10 69.7 68 55.9
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 9.9e-10 67.8 61 49.2
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 9.9e-10 67.8 66 54.5
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.9e-10 67.8 66 54.5
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.7e-09 67.0 66 54.5
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.7e-09 67.0 66 53.0
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 3.8e-09 65.9 66 54.5
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.9e-09 65.5 92 46.7
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.4e-08 63.9 135 34.8
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.9e-08 63.5 67 53.7
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 2.4e-08 63.2 71 50.7
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 7.1e-08 61.6 91 41.8
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 1.3e-06 57.4 59 49.2
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 5.1e-06 55.5 71 43.7


User provided reference genes

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