Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0633800 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 3.8e-296 1020.8 524 100.0
Os03g0664300 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 5.0e-70 269.6 533 36.6
Os03g0668000 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 5.9e-63 246.1 535 35.1
Os04g0113000 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 1.5e-58 231.5 525 33.0
Os03g0669900 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 5.9e-55 219.5 563 32.7
Os01g0824700 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 3.8e-38 163.7 389 31.6
Zm00001eb312790 Zea mays HOM05D010868 ORTHO05D012866 2.7e-36 157.5 559 30.2
Zm00001eb116750 Zea mays HOM05D010868 ORTHO05D012866 1.6e-31 141.7 280 35.4
Os03g0652400 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 6.6e-30 136.3 285 33.0
Zm00001eb312730 Zea mays HOM05D010868 ORTHO05D012866 8.3e-25 119.4 474 29.1
Os03g0653100 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 2.7e-23 114.4 170 40.0
Os03g0668100 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 8.6e-14 82.8 98 50.0
Os08g0529300 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 6.2e-12 76.6 161 33.5
CSS0008769 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 8.0e-12 76.3 166 31.3
CSS0011530 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 8.0e-12 76.3 166 31.3
Os03g0677101 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 8.9e-11 72.8 91 47.3
Os07g0535200 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 7.5e-10 69.7 178 33.1
Os01g0380800 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 9.8e-10 69.3 170 31.8
Os02g0630000 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 9.8e-10 69.3 180 30.0
Os07g0535100 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 3.7e-09 67.4 178 32.6
Os02g0149500 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 4.9e-09 67.0 131 35.9
Zm00001eb312670 Zea mays HOM05D010868 ORTHO05D012866 1.1e-08 65.9 140 39.3
Zm00001eb366400 Zea mays HOM05D000664 ORTHO05D000491 1.1e-08 65.9 160 33.1
Zm00001eb036470 Zea mays HOM05D009359 ORTHO05D012866 1.9e-08 65.1 153 34.6
Os01g0876300 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 2.4e-08 64.7 167 31.1
Zm00001eb146000 Zea mays HOM05D000664 ORTHO05D000491 2.4e-08 64.7 170 32.9
Os08g0529400 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D010075 4.1e-08 63.9 162 33.3
Os03g0632200 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 5.4e-08 63.5 82 43.9
Os08g0360400 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D300787 7.0e-08 63.2 45 60.0
vmacro06136 Vaccinium macrocarpon HOM05D000664 ORTHO05D000491 9.2e-08 62.8 162 27.2
FvH4_2g35930 Fragaria vesca HOM05D000664 ORTHO05D000491 1.6e-07 62.0 184 28.8
Haze_19047 Corylus avellana HOM05D000664 ORTHO05D000491 4.6e-07 60.5 174 29.3
CDE04G2855 Ceratophyllum demersum HOM05D000664 ORTHO05D000491 6.0e-07 60.1 169 29.0
MD01G1168200 Malus domestica HOM05D000007 ORTHO05D000017 6.0e-07 60.1 176 31.8
ATR0693G387 Amborella trichopoda HOM05D007162 ORTHO05D007631 1.0e-06 59.3 160 31.2
arahy.Tifrunner.gnm1.ann1.37FE2U Arachis hypogaea HOM05D000007 ORTHO05D000039 1.0e-06 59.3 161 30.4
arahy.Tifrunner.gnm1.ann1.5HQE64 Arachis hypogaea HOM05D000007 ORTHO05D000039 1.0e-06 59.3 161 30.4
MBI01_g31985_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 1.3e-06 58.9 168 29.8
C04p61800 Brassica napus HOM05D000171 ORTHO05D000101 1.7e-06 58.5 174 26.4
CSS0031414 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 1.7e-06 58.5 80 38.8
RcHm_v2.0_Chr1g0372381 Rosa chinensis HOM05D000007 ORTHO05D000017 1.7e-06 58.5 178 27.5
Os07g0189400 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 3.0e-06 57.8 73 45.2
TWI81G0699 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 3.0e-06 57.8 170 31.8
Zm00001eb302230 Zea mays HOM05D009359 ORTHO05D011905 3.0e-06 57.8 183 31.7
Dinv44144 Davidia involucrata HOM05D000007 ORTHO05D000039 3.9e-06 57.4 166 27.7
MBI05_g28548_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 3.9e-06 57.4 164 31.1
Prupe.2G264700 Prunus persica HOM05D000007 ORTHO05D000017 3.9e-06 57.4 175 29.7
Rhsim04G0064500 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.1e-06 57.0 176 27.3
Sopen02g019700 Solanum pennellii HOM05D000007 ORTHO05D000039 6.6e-06 56.6 150 26.7
CDE06G0907 Ceratophyllum demersum HOM05D000855 ORTHO05D000491 8.6e-06 56.2 171 27.5
COL.COLO4_32999 Corchorus olitorius HOM05D000664 ORTHO05D000491 8.6e-06 56.2 172 27.9
PSO782G1603 Papaver somniferum HOM05D000007 ORTHO05D000017 8.6e-06 56.2 140 30.7
Sabra08G0010400 Salix brachista HOM05D008040 ORTHO05D010075 8.6e-06 56.2 165 29.7
SalBow4G3183 Salvia bowleyana HOM05D000007 ORTHO05D000017 8.6e-06 56.2 165 27.3


User provided reference genes

Program Settings