Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 3.6e-166 588.2 297 100.0
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 3.9e-120 435.3 299 76.9
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 4.7e-110 401.7 295 68.8
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 9.6e-103 377.5 243 76.1
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 3.6e-102 375.6 246 74.8
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 8.1e-102 374.4 243 76.1
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.8e-101 373.2 228 78.9
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 5.3e-101 371.7 244 74.6
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 4.4e-100 368.6 243 72.8
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 7.6e-100 367.9 295 65.8
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 9.9e-100 367.5 243 74.9
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 1.3e-99 367.1 303 64.7
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 1.3e-99 367.1 242 75.2
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.7e-99 366.7 243 74.1
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 2.9e-99 365.9 228 77.6
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 4.9e-99 365.2 264 70.1
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 6.4e-99 364.8 243 73.3
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 6.4e-99 364.8 243 72.8
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 8.4e-99 364.4 242 75.2
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 8.4e-99 364.4 231 77.5
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.4e-98 363.6 250 72.8
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 1.9e-98 363.2 285 68.4
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 1.9e-98 363.2 243 74.5
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.2e-98 362.5 243 73.3
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 4.2e-98 362.1 243 72.8
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 4.2e-98 362.1 242 72.7
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 5.4e-98 361.7 242 73.6
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.4e-98 361.7 243 73.7
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 9.3e-98 360.9 246 72.4
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.2e-97 360.5 226 78.3
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 1.2e-97 360.5 243 73.3
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 2.1e-97 359.8 296 63.9
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 2.7e-97 359.4 243 73.3
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 2.7e-97 359.4 241 72.6
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 4.6e-97 358.6 273 67.8
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 6.0e-97 358.2 272 66.9
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 6.0e-97 358.2 297 63.6
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 7.8e-97 357.8 272 66.5
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 7.8e-97 357.8 263 68.4
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 7.8e-97 357.8 286 67.5
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.3e-96 357.1 243 72.8
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.3e-96 357.1 243 72.8
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 1.3e-96 357.1 249 71.1
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 1.7e-96 356.7 301 63.8
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.7e-96 356.7 273 65.9
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 2.3e-96 356.3 235 75.7
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 3.0e-96 355.9 243 72.4
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 5.1e-96 355.1 243 71.6
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 6.6e-96 354.8 255 68.6
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 8.7e-96 354.4 243 71.2
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.1e-95 354.0 243 71.6
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 1.5e-95 353.6 246 69.9
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.9e-95 353.2 243 70.8
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.5e-95 352.8 243 71.2
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 2.5e-95 352.8 249 69.9
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 3.3e-95 352.4 286 64.7
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 4.3e-95 352.1 295 62.0
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 5.6e-95 351.7 226 75.2
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 7.3e-95 351.3 242 71.5
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 7.3e-95 351.3 259 68.7
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 1.3e-94 350.5 243 70.0
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 2.1e-94 349.7 228 74.1
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 2.1e-94 349.7 243 71.2
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 4.8e-94 348.6 243 70.0
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 4.8e-94 348.6 300 62.3
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 6.2e-94 348.2 295 61.7
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 8.1e-94 347.8 228 74.6
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.1e-93 347.4 226 73.5
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 1.4e-93 347.1 244 70.1
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 1.4e-93 347.1 267 66.3
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 1.8e-93 346.7 241 68.9
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 1.8e-93 346.7 243 68.7
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 1.8e-93 346.7 258 67.8
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.4e-93 346.3 243 70.4
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 2.4e-93 346.3 248 69.4
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 3.1e-93 345.9 226 73.0
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 3.1e-93 345.9 226 73.0
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 3.1e-93 345.9 226 73.0
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 5.3e-93 345.1 226 72.6
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 6.9e-93 344.7 243 68.3
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 9.0e-93 344.4 234 71.8
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 9.0e-93 344.4 243 71.2
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 9.0e-93 344.4 227 73.6
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.2e-92 344.0 301 61.8
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 1.5e-92 343.6 243 69.1
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 2.0e-92 343.2 243 68.7
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 2.0e-92 343.2 260 66.2
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 4.5e-92 342.0 228 72.4
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 4.5e-92 342.0 249 68.7
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 4.5e-92 342.0 228 75.0
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 5.8e-92 341.7 278 63.3
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 1.3e-91 340.5 219 75.3
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.3e-91 340.5 310 61.0
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.3e-91 340.5 242 69.8
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.7e-91 340.1 247 70.0
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 1.7e-91 340.1 226 73.0
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 1.7e-91 340.1 249 68.3
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 2.9e-91 339.3 242 68.6
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 4.9e-91 338.6 249 67.9
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 6.4e-91 338.2 279 63.1
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.9e-90 336.7 243 70.0
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 2.4e-90 336.3 278 63.3
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 5.4e-90 335.1 288 61.8
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 2.3e-88 329.7 228 72.4
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 8.7e-88 327.8 236 69.5
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 1.9e-87 326.6 283 60.8
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 4.3e-87 325.5 201 78.1
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 3.7e-86 322.4 313 56.5
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.4e-85 320.5 294 57.5
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.5e-84 317.0 303 59.7
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 3.2e-82 309.3 224 66.1
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 4.2e-82 308.9 219 68.0
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.5e-81 305.8 190 78.4
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.3e-80 303.9 198 74.7
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 6.7e-80 301.6 223 65.0
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.5e-79 300.4 245 64.1
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 1.6e-78 297.0 213 68.5
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 3.7e-78 295.8 210 69.0
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.8e-78 295.4 211 68.2
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 6.2e-78 295.0 201 73.6
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 2.4e-77 293.1 243 62.1
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 4.2e-74 282.3 220 63.2
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 3.0e-72 276.2 239 63.2
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 1.1e-66 257.7 252 56.0
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 2.3e-64 250.0 218 56.9
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 8.8e-64 248.1 286 46.2
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.0e-59 234.6 213 54.5
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.0e-59 234.6 213 54.5
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 4.2e-58 229.2 216 57.9
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 6.7e-56 221.9 140 77.9
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 2.6e-55 219.9 140 75.0
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.2e-50 202.6 425 35.3
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.7e-49 199.9 132 71.2
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 6.1e-49 198.7 282 41.1
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.0e-47 193.7 191 57.6
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.6e-47 193.4 236 44.5
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 5.3e-45 185.7 298 38.3
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 7.2e-42 175.3 110 75.5
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 1.4e-40 171.0 138 63.8
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.2e-35 153.7 99 75.8
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 1.1e-34 151.4 108 64.8
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 8.0e-33 145.2 97 74.2
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 5.7e-31 139.0 104 66.3
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 2.7e-28 130.2 128 57.8
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.5e-26 124.4 101 65.3
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 1.6e-25 120.9 80 72.5
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 5.2e-24 115.9 92 66.3
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 2.0e-20 104.0 67 73.1
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 2.3e-16 90.5 59 76.3
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.2e-15 88.2 59 71.2
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 3.5e-12 76.6 51 72.5
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.2e-07 61.6 177 32.8


User provided reference genes

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